1 HisKA_3#1
212-275 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:212:0.00000000000000182:275:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB09_RS04375
Histidine kinase, Classic
Bifidobacterium breve · GCF_002838325
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002838325#NRBB09_RS04375Stable P2CS identifier used across views.
GenomeGCF_002838325Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 448 aa (40.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-440 aa · 119 aa · 26.6% of protein
Raw token
HATPase_c:322:0.000000000231:440:120:109- Raw architecture: HisKA_3:212:0.00000000000000182:275:64:68#HATPase_c:322:0.000000000231:440:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002838325::NZ_CP021387.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span986234-988230Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB09_0840RefSeq proteinWP_106629414.1
Context group ID
GCF_002838325::NZ_CP021387.1::G00005Context members
NRBB09_RS04370NRBB09_RS04375
Partner locus tags
NRBB09_RS04370NRBB09_RS04375
Partner old locus tags
NRBB09_0839NRBB09_0840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_106629414.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB09_RS04375Primary locus identifier stored in the genes table.
Old locus tagNRBB09_0840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021387.1Sequence record reported by the local genomic context database.
Genomic interval986 884-988 230 nt1 347 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span986 234-988 230 ntGCF_002838325::NZ_CP021387.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838325::NZ_CP021387.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021387.1All displayed genes belong to this local TCS context.
Neighborhood span986 234-988 230 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
986 234 nt988 230 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NRBB09_RS04370GCF_002838325#NRBB09_RS04370
RRNarL
986 234-986 887 nt · Reverse (-)
NRBB09_RS04375GCF_002838325#NRBB09_RS04375
HKClassicCurrent focus
986 884-988 230 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838325#NRBB09_RS04375The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1990155
Simplified PFAM architecture for HKOC_1990155
PFAM domain coverage: 186 / 448 aa (41.5%)
1 aa448 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[212-277] | HATPase_c[320-439]
- Domain count: 2
- Matched identifier: HKOC_1990155
- Positioned domains: HisKA_3 212-277 ; HATPase_c 320-439
Cluster members and taxonomy
Representative gene: GCF_002838325#NRBB09_RS04375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838325
AssemblyASM283832v1 · Complete Genomehaploid
Genome composition2 265 557 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key