1 HAMP#1
103-172 aa · 70 aa · 16.7% of protein
Raw token
HAMP:103:0.0000000000128:172:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB02_RS02385
Histidine kinase, Classic
Bifidobacterium breve · GCF_002838265
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002838265#NRBB02_RS02385Stable P2CS identifier used across views.
GenomeGCF_002838265Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 418 aa (57.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation3 items
2 HisKA#2
197-261 aa · 65 aa · 15.6% of protein
Raw token
HisKA:197:0.0000000000306:261:65:643 HATPase_c#3
307-410 aa · 104 aa · 24.9% of protein
Raw token
HATPase_c:307:1.18e-18:410:108:109- Raw architecture: HAMP:103:0.0000000000128:172:70:69#HisKA:197:0.0000000000306:261:65:64#HATPase_c:307:1.18e-18:410:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002838265::NZ_CP021385.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span555859-557893Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB02_0458RefSeq proteinWP_232783528.1
Context group ID
GCF_002838265::NZ_CP021385.1::G00002Context members
NRBB02_RS02380NRBB02_RS02385
Partner locus tags
NRBB02_RS02380NRBB02_RS02385
Partner old locus tags
NRBB02_0457NRBB02_0458
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232783528.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB02_RS02385Primary locus identifier stored in the genes table.
Old locus tagNRBB02_0458Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021385.1Sequence record reported by the local genomic context database.
Genomic interval556 637-557 893 nt1 257 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span555 859-557 893 ntGCF_002838265::NZ_CP021385.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838265::NZ_CP021385.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021385.1All displayed genes belong to this local TCS context.
Neighborhood span555 859-557 893 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
555 859 nt557 893 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NRBB02_RS02380GCF_002838265#NRBB02_RS02380
RROmpR
555 859-556 530 nt · Forward (+)
NRBB02_RS02385GCF_002838265#NRBB02_RS02385
HKClassicCurrent focus
556 637-557 893 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838605#NRBB18_RS02385Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1876664
Simplified PFAM architecture for HKOC_1876664
PFAM domain coverage: 217 / 457 aa (47.5%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[161-210] | HisKA[237-300] | HATPase_c[347-449]
- Domain count: 3
- Matched identifier: HKOC_1876664
- Positioned domains: HAMP 161-210 ; HisKA 237-300 ; HATPase_c 347-449
Cluster members and taxonomy
Representative gene: GCF_002838605#NRBB18_RS02385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838265
AssemblyASM283826v1 · Complete Genomehaploid
Genome composition2 289 884 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key