1 HAMP#1
128-198 aa · 71 aa · 16.4% of protein
Raw token
HAMP:128:0.00000000892:198:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DRBB26_RS08595
Histidine kinase, Classic
Bifidobacterium breve · GCF_002838225
ClassHKTypeClassicLength432 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002838225#DRBB26_RS08595Stable P2CS identifier used across views.
GenomeGCF_002838225Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length432 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 432 aa (53.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
203-267 aa · 65 aa · 15.0% of protein
Raw token
HisKA:203:0.00000000000581:267:65:643 HATPase_c#3
314-410 aa · 97 aa · 22.5% of protein
Raw token
HATPase_c:314:0.0000000000035:410:102:109- Raw architecture: HAMP:128:0.00000000892:198:74:69#HisKA:203:0.00000000000581:267:65:64#HATPase_c:314:0.0000000000035:410:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002838225::NZ_CP021390.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1913647-1915640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDRBB26_1662RefSeq proteinWP_106628442.1
Context group ID
GCF_002838225::NZ_CP021390.1::G00013Context members
DRBB26_RS08590DRBB26_RS08595
Partner locus tags
DRBB26_RS08590DRBB26_RS08595
Partner old locus tags
DRBB26_1661DRBB26_1662
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_106628442.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2QZN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2QZN3_BIFBRDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDRBB26_RS08595Primary locus identifier stored in the genes table.
Old locus tagDRBB26_1662Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021390.1Sequence record reported by the local genomic context database.
Genomic interval1 914 342-1 915 640 nt1 299 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 913 647-1 915 640 ntGCF_002838225::NZ_CP021390.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838225::NZ_CP021390.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021390.1All displayed genes belong to this local TCS context.
Neighborhood span1 913 647-1 915 640 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 913 647 nt1 915 640 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DRBB26_RS08590GCF_002838225#DRBB26_RS08590
RROmpR
1 913 647-1 914 345 nt · Forward (+)
DRBB26_RS08595GCF_002838225#DRBB26_RS08595
HKClassicCurrent focus
1 914 342-1 915 640 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838225#DRBB26_RS08595The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2153328
Simplified PFAM architecture for HKOC_2153328
PFAM domain coverage: 162 / 432 aa (37.5%)
1 aa432 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[203-267] | HATPase_c[316-412]
- Domain count: 2
- Matched identifier: HKOC_2153328
- Positioned domains: HisKA 203-267 ; HATPase_c 316-412
Cluster members and taxonomy
Representative gene: GCF_002838225#DRBB26_RS08595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838225
AssemblyASM283822v1 · Complete Genomehaploid
Genome composition2 396 387 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 26 · HK 10 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key