1 HisKA_3#1
211-274 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:211:0.0000000000000203:274:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1480_RS04330
Histidine kinase, Classic
Bifidobacterium longum · GCF_002833065
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002833065#APC1480_RS04330Stable P2CS identifier used across views.
GenomeGCF_002833065Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 446 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
321-439 aa · 119 aa · 26.7% of protein
Raw token
HATPase_c:321:0.000000102:439:120:109- Raw architecture: HisKA_3:211:0.0000000000000203:274:64:68#HATPase_c:321:0.000000102:439:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002833065::NZ_PJDV01000006.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span331290-333283Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1480_0813RefSeq proteinWP_007058634.1
Context group ID
GCF_002833065::NZ_PJDV01000006.1::G00006Context members
APC1480_RS04325APC1480_RS04330
Partner locus tags
APC1480_RS04325APC1480_RS04330
Partner old locus tags
APC1480_0812APC1480_0813
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007058634.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX1LJ83Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX1LJ83_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1480_RS04330Primary locus identifier stored in the genes table.
Old locus tagAPC1480_0813Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJDV01000006.1Sequence record reported by the local genomic context database.
Genomic interval331 943-333 283 nt1 341 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span331 290-333 283 ntGCF_002833065::NZ_PJDV01000006.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002833065::NZ_PJDV01000006.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJDV01000006.1All displayed genes belong to this local TCS context.
Neighborhood span331 290-333 283 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
331 290 nt333 283 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APC1480_RS04325GCF_002833065#APC1480_RS04325
RRNarL
331 290-331 943 nt · Reverse (-)
APC1480_RS04330GCF_002833065#APC1480_RS04330
HKClassicCurrent focus
331 943-333 283 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166315#BBMN68_RS03205Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2010535
Simplified PFAM architecture for HKOC_2010535
PFAM domain coverage: 66 / 446 aa (14.8%)
1 aa446 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[211-276]
- Domain count: 1
- Matched identifier: HKOC_2010535
- Positioned domains: HisKA_3 211-276
Cluster members and taxonomy
Representative gene: GCF_000166315#BBMN68_RS03205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002833065
AssemblyASM283306v1 · Contighaploid
Genome composition2 477 750 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key