1 Response_reg#1
34-135 aa · 102 aa · 47.0% of protein
Raw token
Response_reg:34:0.0000000000124:135:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1504_RS04675
Response regulator, unclassified
Bifidobacterium longum · GCF_002832955
ClassRRTypeunclassifiedLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002832955#APC1504_RS04675Stable P2CS identifier used across views.
GenomeGCF_002832955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 217 aa (47.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:34:0.0000000000124:135:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002832955::NZ_PJDS01000018.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5035-5688Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1504_0870RefSeq proteinWP_232335839.1
Context group ID
GCF_002832955::NZ_PJDS01000018.1::G00008Context members
APC1504_RS04675
Partner locus tags
APC1504_RS04675
Partner old locus tags
APC1504_0870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232335839.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1504_RS04675Primary locus identifier stored in the genes table.
Old locus tagAPC1504_0870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJDS01000018.1Sequence record reported by the local genomic context database.
Genomic interval5 035-5 688 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 035-5 688 ntGCF_002832955::NZ_PJDS01000018.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002832955::NZ_PJDS01000018.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJDS01000018.1All displayed genes belong to this local TCS context.
Neighborhood span5 035-5 688 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 035 nt5 688 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
APC1504_RS04675GCF_002832955#APC1504_RS04675
RRunclassifiedCurrent focus
5 035-5 688 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002832955#APC1504_RS04675The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1853173
Simplified PFAM architecture for RROC_1853173
PFAM domain coverage: 112 / 217 aa (51.6%)
1 aa217 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[34-145]
- Domain count: 1
- Matched identifier: RROC_1853173
- Positioned domains: Response_reg 34-145 ; Response_reg 34-145
Cluster members and taxonomy
Representative gene: GCF_002832955#APC1504_RS04675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002832955
AssemblyASM283295v1 · Contighaploid
Genome composition2 310 288 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key