1 HisKA_3#1
10-68 aa · 59 aa · 10.1% of protein
Raw token
HisKA_3:10:0.00000000000000173:68:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1504_RS03780
Histidine kinase, Classic
Bifidobacterium longum · GCF_002832955
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002832955#APC1504_RS03780Stable P2CS identifier used across views.
GenomeGCF_002832955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 585 aa (37.9%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
111-202 aa · 92 aa · 15.7% of protein
Raw token
HATPase_c:111:0.000000000000255:202:108:1093 HisKA_3#3
461-531 aa · 71 aa · 12.1% of protein
Raw token
HisKA_3:461:0.0000214:531:71:68- Raw architecture: HisKA_3:10:0.00000000000000173:68:59:68#HATPase_c:111:0.000000000000255:202:108:109#HisKA_3:461:0.0000214:531:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002832955::NZ_PJDS01000012.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span388853-391522Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002832955::NZ_PJDS01000012.1::G00005Context members
APC1504_RS03775APC1504_RS03780
Partner locus tags
APC1504_RS03775APC1504_RS03780
Partner old locus tags
APC1504_0696
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101009950.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1504_RS03780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_PJDS01000012.1Sequence record reported by the local genomic context database.
Genomic interval389 765-391 522 nt1 758 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span388 853-391 522 ntGCF_002832955::NZ_PJDS01000012.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002832955::NZ_PJDS01000012.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJDS01000012.1All displayed genes belong to this local TCS context.
Neighborhood span388 853-391 522 nt2 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
388 853 nt391 522 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APC1504_RS03775GCF_002832955#APC1504_RS03775
RRNarL
388 853-389 743 nt · Reverse (-)
APC1504_RS03780GCF_002832955#APC1504_RS03780
HKClassicCurrent focus
389 765-391 522 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS09030Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0530715
Simplified PFAM architecture for HKOC_0530715
PFAM domain coverage: 410 / 819 aa (50.1%)
1 aa819 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-137] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-614]
- Domain count: 4
- Matched identifier: HKOC_0530715
- Positioned domains: DUF7134 13-137 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-614
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS09030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002832955
AssemblyASM283295v1 · Contighaploid
Genome composition2 310 288 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key