1 HAMP#1
39-109 aa · 71 aa · 19.8% of protein
Raw token
HAMP:39:0.000000000583:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COE23_RS00485
Histidine kinase, Classic
Bacillus cereus · GCF_002585905
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_002585905#COE23_RS00485Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 359 aa (69.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 18.9% of protein
Raw token
HisKA:120:6.81e-19:187:68:643 HATPase_c#3
238-349 aa · 112 aa · 31.2% of protein
Raw token
HATPase_c:238:6.14e-27:349:112:109- Raw architecture: HAMP:39:0.000000000583:109:71:69#HisKA:120:6.81e-19:187:68:64#HATPase_c:238:6.14e-27:349:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_002585905::NZ_NUOX01000001.1::G00007
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span78761-82815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOE23_00485RefSeq proteinWP_002199786.1
Context group ID
GCF_002585905::NZ_NUOX01000001.1::G00007Context members
COE23_RS00485COE23_RS00490COE23_RS00495
Partner locus tags
COE23_RS00485COE23_RS00490COE23_RS00495
Partner old locus tags
COE23_00485COE23_00490COE23_00495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002199786.1Primary protein accession used for annex mappings.
UniProt accessionJ8ACB6Primary UniProt accession resolved in the annex database.
UniProt IDJ8ACB6_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOE23_RS00485Primary locus identifier stored in the genes table.
Old locus tagCOE23_00485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUOX01000001.1Sequence record reported by the local genomic context database.
Genomic interval78 761-79 840 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 761-82 815 ntGCF_002585905::NZ_NUOX01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002585905::NZ_NUOX01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUOX01000001.1All displayed genes belong to this local TCS context.
Neighborhood span78 761-82 815 nt4 055 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 761 nt82 815 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
COE23_RS00485GCF_002585905#COE23_RS00485
HKClassicCurrent focus
78 761-79 840 nt · Reverse (-)
COE23_RS00490GCF_002585905#COE23_RS00490
RROmpR
79 837-80 550 nt · Reverse (-)
COE23_RS00495GCF_002585905#COE23_RS00495
HKClassic
81 046-82 815 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291295#IEE_RS09960Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753120
Simplified PFAM architecture for HKOC_2753120
PFAM domain coverage: 178 / 359 aa (49.6%)
1 aa359 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[120-186] | HATPase_c[238-348]
- Domain count: 2
- Matched identifier: HKOC_2753120
- Positioned domains: HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_000291295#IEE_RS09960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002585905
AssemblyASM258590v1 · Scaffoldhaploid
Genome composition5 424 615 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 112 · HK 62 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key