1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:0.00000000000000276:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL41_RS11715
Histidine kinase, Classic
Bacillus mycoides · GCF_002569385
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569385#COL41_RS11715Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 458 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000165:303:61:643 HATPase_c#3
349-448 aa · 100 aa · 21.8% of protein
Raw token
HATPase_c:349:2.39e-17:448:103:109- Raw architecture: HAMP:165:0.00000000000000276:232:68:69#HisKA:244:0.00000000000165:303:61:64#HATPase_c:349:2.39e-17:448:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569385::NZ_NVFI01000014.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span361149-363165Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL41_11725RefSeq proteinWP_061674086.1
Context group ID
GCF_002569385::NZ_NVFI01000014.1::G00009Context members
COL41_RS11710COL41_RS11715
Partner locus tags
COL41_RS11710COL41_RS11715
Partner old locus tags
COL41_11720COL41_11725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_061674086.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL41_RS11715Primary locus identifier stored in the genes table.
Old locus tagCOL41_11725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVFI01000014.1Sequence record reported by the local genomic context database.
Genomic interval361 789-363 165 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span361 149-363 165 ntGCF_002569385::NZ_NVFI01000014.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569385::NZ_NVFI01000014.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVFI01000014.1All displayed genes belong to this local TCS context.
Neighborhood span361 149-363 165 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
361 149 nt363 165 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL41_RS11710GCF_002569385#COL41_RS11710
RROmpR
361 149-361 796 nt · Forward (+)
COL41_RS11715GCF_002569385#COL41_RS11715
HKClassicCurrent focus
361 789-363 165 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002569385#COL41_RS11715The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1861712
Simplified PFAM architecture for HKOC_1861712
PFAM domain coverage: 206 / 458 aa (45.0%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-445]
- Domain count: 3
- Matched identifier: HKOC_1861712
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-445
Cluster members and taxonomy
Representative gene: GCF_002569385#COL41_RS11715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002569385
AssemblyASM256938v1 · Scaffoldhaploid
Genome composition5 581 213 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key