1 Response_reg#1
1-63 aa · 63 aa · 35.0% of protein
Raw token
Response_reg:1:1.03e-19:63:64:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ51_RS28505
Response regulator OmpR family
Bacillus thuringiensis · GCF_002566545
ClassRRTypeOmpRLength180 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002566545#COJ51_RS28505Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length180 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage140 / 180 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa180 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
102-178 aa · 77 aa · 42.8% of protein
Raw token
Trans_reg_C:102:7.12e-32:178:77:77- Raw architecture: Response_reg:1:1.03e-19:63:64:111#Trans_reg_C:102:7.12e-32:178:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002566545::NZ_NUYC01000666.1::G00052
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span290-834Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ51_28510RefSeq proteinWP_098564901.1
Context group ID
GCF_002566545::NZ_NUYC01000666.1::G00052Context members
COJ51_RS28505
Partner locus tags
COJ51_RS28505
Partner old locus tags
COJ51_28510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098564901.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ51_RS28505Primary locus identifier stored in the genes table.
Old locus tagCOJ51_28510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUYC01000666.1Sequence record reported by the local genomic context database.
Genomic interval290-834 nt545 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span290-834 ntGCF_002566545::NZ_NUYC01000666.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566545::NZ_NUYC01000666.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUYC01000666.1All displayed genes belong to this local TCS context.
Neighborhood span290-834 nt545 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
290 nt834 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COJ51_RS28505GCF_002566545#COJ51_RS28505
RROmpRCurrent focus
290-834 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS11225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1157708
Simplified PFAM architecture for RROC_1157708
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1157708
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS11225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002566545
AssemblyASM256654v1 · Scaffoldhaploid
Genome composition5 776 026 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 116 · HK 62 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key