1 HisKA#1
191-258 aa · 68 aa · 16.3% of protein
Raw token
HisKA:191:0.0000000000000193:258:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ51_RS24295
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002566545
ClassHKTypeClassicLength416 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002566545#COJ51_RS24295Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length416 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 416 aa (43.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa416 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
303-414 aa · 112 aa · 26.9% of protein
Raw token
HATPase_c:303:1.3e-30:414:112:109- Raw architecture: HisKA:191:0.0000000000000193:258:68:64#HATPase_c:303:1.3e-30:414:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002566545::NZ_NUYC01000379.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9274-11192Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ51_24295RefSeq proteinWP_080017751.1
Context group ID
GCF_002566545::NZ_NUYC01000379.1::G00037Context members
COJ51_RS24295COJ51_RS24300
Partner locus tags
COJ51_RS24295COJ51_RS24300
Partner old locus tags
COJ51_24295COJ51_24300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_080017751.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6TU80Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6TU80_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ51_RS24295Primary locus identifier stored in the genes table.
Old locus tagCOJ51_24295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUYC01000379.1Sequence record reported by the local genomic context database.
Genomic interval9 274-10 524 nt1 251 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 274-11 192 ntGCF_002566545::NZ_NUYC01000379.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566545::NZ_NUYC01000379.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUYC01000379.1All displayed genes belong to this local TCS context.
Neighborhood span9 274-11 192 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 274 nt11 192 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COJ51_RS24295GCF_002566545#COJ51_RS24295
HKClassicCurrent focus
9 274-10 524 nt · Reverse (-)
COJ51_RS24300GCF_002566545#COJ51_RS24300
RROmpR
10 521-11 192 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS27225Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2302407
Simplified PFAM architecture for HKOC_2302407
PFAM domain coverage: 177 / 416 aa (42.5%)
1 aa416 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[192-257] | HATPase_c[303-413]
- Domain count: 2
- Matched identifier: HKOC_2302407
- Positioned domains: HisKA 192-257 ; HATPase_c 303-413
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS27225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002566545
AssemblyASM256654v1 · Scaffoldhaploid
Genome composition5 776 026 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 116 · HK 62 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key