1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:6.77e-16:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ51_RS23015
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002566545
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002566545#COJ51_RS23015Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 458 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000182:303:61:643 HATPase_c#3
349-448 aa · 100 aa · 21.8% of protein
Raw token
HATPase_c:349:7.78e-19:448:103:109- Raw architecture: HAMP:165:6.77e-16:232:68:69#HisKA:244:0.00000000000182:303:61:64#HATPase_c:349:7.78e-19:448:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002566545::NZ_NUYC01000351.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4636-6652Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ51_23015RefSeq proteinWP_098255495.1
Context group ID
GCF_002566545::NZ_NUYC01000351.1::G00034Context members
COJ51_RS23015COJ51_RS23020
Partner locus tags
COJ51_RS23015COJ51_RS23020
Partner old locus tags
COJ51_23015COJ51_23020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098255495.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ51_RS23015Primary locus identifier stored in the genes table.
Old locus tagCOJ51_23015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUYC01000351.1Sequence record reported by the local genomic context database.
Genomic interval4 636-6 012 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 636-6 652 ntGCF_002566545::NZ_NUYC01000351.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566545::NZ_NUYC01000351.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUYC01000351.1All displayed genes belong to this local TCS context.
Neighborhood span4 636-6 652 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 636 nt6 652 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COJ51_RS23015GCF_002566545#COJ51_RS23015
HKClassicCurrent focus
4 636-6 012 nt · Reverse (-)
COJ51_RS23020GCF_002566545#COJ51_RS23020
RROmpR
6 005-6 652 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002559855#CN283_RS06030Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1861637
Simplified PFAM architecture for HKOC_1861637
PFAM domain coverage: 207 / 458 aa (45.2%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-446]
- Domain count: 3
- Matched identifier: HKOC_1861637
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-446
Cluster members and taxonomy
Representative gene: GCF_002559855#CN283_RS06030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002566545
AssemblyASM256654v1 · Scaffoldhaploid
Genome composition5 776 026 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 116 · HK 62 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key