1 HAMP#1
58-127 aa · 70 aa · 19.1% of protein
Raw token
HAMP:58:0.00000000000492:127:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ51_RS10905
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002566545
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002566545#COJ51_RS10905Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 366 aa (65.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-199 aa · 62 aa · 16.9% of protein
Raw token
HisKA:138:0.000000000000169:199:62:643 HATPase_c#3
251-358 aa · 108 aa · 29.5% of protein
Raw token
HATPase_c:251:1.12e-22:358:109:109- Raw architecture: HAMP:58:0.00000000000492:127:70:69#HisKA:138:0.000000000000169:199:62:64#HATPase_c:251:1.12e-22:358:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002566545::NZ_NUYC01000123.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6531-8295Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ51_10905RefSeq proteinWP_114160070.1
Context group ID
GCF_002566545::NZ_NUYC01000123.1::G00006Context members
COJ51_RS10905COJ51_RS10910
Partner locus tags
COJ51_RS10905COJ51_RS10910
Partner old locus tags
COJ51_10905COJ51_10910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_114160070.1Primary protein accession used for annex mappings.
UniProt accessionA0AB73UC82Primary UniProt accession resolved in the annex database.
UniProt IDA0AB73UC82_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ51_RS10905Primary locus identifier stored in the genes table.
Old locus tagCOJ51_10905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUYC01000123.1Sequence record reported by the local genomic context database.
Genomic interval6 531-7 631 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 531-8 295 ntGCF_002566545::NZ_NUYC01000123.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566545::NZ_NUYC01000123.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUYC01000123.1All displayed genes belong to this local TCS context.
Neighborhood span6 531-8 295 nt1 765 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 531 nt8 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COJ51_RS10905GCF_002566545#COJ51_RS10905
HKClassicCurrent focus
6 531-7 631 nt · Reverse (-)
COJ51_RS10910GCF_002566545#COJ51_RS10910
RROmpR
7 597-8 295 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160935#BCERE0005_RS08550Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2711988
Simplified PFAM architecture for HKOC_2711988
PFAM domain coverage: 223 / 366 aa (60.9%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[76-127] | HisKA[138-200] | HATPase_c[252-359]
- Domain count: 3
- Matched identifier: HKOC_2711988
- Positioned domains: HAMP 76-127 ; HisKA 138-200 ; HATPase_c 252-359
Cluster members and taxonomy
Representative gene: GCF_000160935#BCERE0005_RS08550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002566545
AssemblyASM256654v1 · Scaffoldhaploid
Genome composition5 776 026 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 116 · HK 62 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key