1 HisKA#1
247-313 aa · 67 aa · 14.3% of protein
Raw token
HisKA:247:0.00000000114:313:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ51_RS10370
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002566545
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002566545#COJ51_RS10370Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 469 aa (33.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa469 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
358-447 aa · 90 aa · 19.2% of protein
Raw token
HATPase_c:358:5.35e-21:447:90:109- Raw architecture: HisKA:247:0.00000000114:313:67:64#HATPase_c:358:5.35e-21:447:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002566545::NZ_NUYC01000115.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1424Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ51_10370RefSeq proteinWP_423231270.1
Context group ID
GCF_002566545::NZ_NUYC01000115.1::G00005Context members
COJ51_RS10370
Partner locus tags
COJ51_RS10370
Partner old locus tags
COJ51_10370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_423231270.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ51_RS10370Primary locus identifier stored in the genes table.
Old locus tagCOJ51_10370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUYC01000115.1Sequence record reported by the local genomic context database.
Genomic interval1-1 424 nt1 424 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 424 ntGCF_002566545::NZ_NUYC01000115.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566545::NZ_NUYC01000115.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUYC01000115.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 424 nt1 424 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 424 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COJ51_RS10370GCF_002566545#COJ51_RS10370
HKClassicCurrent focus
1-1 424 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002566545#COJ51_RS10370The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1728887
Simplified PFAM architecture for HKOC_1728887
PFAM domain coverage: 173 / 469 aa (36.9%)
1 aa469 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[248-312] | HATPase_c[359-466]
- Domain count: 2
- Matched identifier: HKOC_1728887
- Positioned domains: HisKA 248-312 ; HATPase_c 359-466
Cluster members and taxonomy
Representative gene: GCF_002566545#COJ51_RS10370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002566545
AssemblyASM256654v1 · Scaffoldhaploid
Genome composition5 776 026 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 116 · HK 62 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key