1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:4.98e-20:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ51_RS08225
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002566545
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002566545#COJ51_RS08225Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.0000000000834:365:97:109- Raw architecture: HisKA_3:177:4.98e-20:244:68:68#HATPase_c:289:0.0000000000834:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002566545::NZ_NUYC01000090.1::G00070
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2624-4367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ51_08225RefSeq proteinWP_000397686.1
Context group ID
GCF_002566545::NZ_NUYC01000090.1::G00070Context members
COJ51_RS08225COJ51_RS08230
Partner locus tags
COJ51_RS08225COJ51_RS08230
Partner old locus tags
COJ51_08225COJ51_08230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000397686.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ51_RS08225Primary locus identifier stored in the genes table.
Old locus tagCOJ51_08225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUYC01000090.1Sequence record reported by the local genomic context database.
Genomic interval2 624-3 724 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 624-4 367 ntGCF_002566545::NZ_NUYC01000090.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566545::NZ_NUYC01000090.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUYC01000090.1All displayed genes belong to this local TCS context.
Neighborhood span2 624-4 367 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 624 nt4 367 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COJ51_RS08225GCF_002566545#COJ51_RS08225
HKClassicCurrent focus
2 624-3 724 nt · Reverse (-)
COJ51_RS08230GCF_002566545#COJ51_RS08230
RRNarL
3 729-4 367 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS04900Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2712124
Simplified PFAM architecture for HKOC_2712124
PFAM domain coverage: 144 / 366 aa (39.3%)
1 aa366 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[177-243] | HATPase_c[289-365]
- Domain count: 2
- Matched identifier: HKOC_2712124
- Positioned domains: HisKA_3 177-243 ; HATPase_c 289-365
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS04900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002566545
AssemblyASM256654v1 · Scaffoldhaploid
Genome composition5 776 026 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 116 · HK 62 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key