1 HAMP#1
166-235 aa · 70 aa · 14.4% of protein
Raw token
HAMP:166:0.00000000000000502:235:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ51_RS06555
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002566545
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002566545#COJ51_RS06555Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 485 aa (51.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation3 items
2 HisKA#2
260-325 aa · 66 aa · 13.6% of protein
Raw token
HisKA:260:0.0000000000000864:325:66:643 HATPase_c#3
371-482 aa · 112 aa · 23.1% of protein
Raw token
HATPase_c:371:1.05e-18:482:113:109- Raw architecture: HAMP:166:0.00000000000000502:235:70:69#HisKA:260:0.0000000000000864:325:66:64#HATPase_c:371:1.05e-18:482:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002566545::NZ_NUYC01000069.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span167-2303Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ51_06555RefSeq proteinWP_098255962.1
Context group ID
GCF_002566545::NZ_NUYC01000069.1::G00063Context members
COJ51_RS06555COJ51_RS06560
Partner locus tags
COJ51_RS06555COJ51_RS06560
Partner old locus tags
COJ51_06555COJ51_06560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098255962.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ51_RS06555Primary locus identifier stored in the genes table.
Old locus tagCOJ51_06555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUYC01000069.1Sequence record reported by the local genomic context database.
Genomic interval167-1 624 nt1 458 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span167-2 303 ntGCF_002566545::NZ_NUYC01000069.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566545::NZ_NUYC01000069.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUYC01000069.1All displayed genes belong to this local TCS context.
Neighborhood span167-2 303 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
167 nt2 303 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COJ51_RS06555GCF_002566545#COJ51_RS06555
HKClassicCurrent focus
167-1 624 nt · Reverse (-)
COJ51_RS06560GCF_002566545#COJ51_RS06560
RROmpR
1 638-2 303 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002551895#COM89_RS26695Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1577493
Simplified PFAM architecture for HKOC_1577493
PFAM domain coverage: 229 / 485 aa (47.2%)
1 aa485 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[261-325] | HATPase_c[372-483]
- Domain count: 3
- Matched identifier: HKOC_1577493
- Positioned domains: HAMP 184-235 ; HisKA 261-325 ; HATPase_c 372-483
Cluster members and taxonomy
Representative gene: GCF_002551895#COM89_RS26695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002566545
AssemblyASM256654v1 · Scaffoldhaploid
Genome composition5 776 026 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 116 · HK 62 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key