1 HisKA#1
356-414 aa · 59 aa · 10.2% of protein
Raw token
HisKA:356:0.00000000282:414:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN404_RS09910
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002562035
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002562035#CN404_RS09910Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 580 aa (29.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
471-579 aa · 109 aa · 18.8% of protein
Raw token
HATPase_c:471:2.78e-30:579:109:109- Raw architecture: HisKA:356:0.00000000282:414:60:64#HATPase_c:471:2.78e-30:579:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002562035::NZ_NTVB01000049.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18951-21407Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN404_09910RefSeq proteinWP_098395116.1
Context group ID
GCF_002562035::NZ_NTVB01000049.1::G00043Context members
CN404_RS09910CN404_RS09915
Partner locus tags
CN404_RS09910CN404_RS09915
Partner old locus tags
CN404_09910CN404_09915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098395116.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN404_RS09910Primary locus identifier stored in the genes table.
Old locus tagCN404_09910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTVB01000049.1Sequence record reported by the local genomic context database.
Genomic interval18 951-20 693 nt1 743 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 951-21 407 ntGCF_002562035::NZ_NTVB01000049.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002562035::NZ_NTVB01000049.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTVB01000049.1All displayed genes belong to this local TCS context.
Neighborhood span18 951-21 407 nt2 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 951 nt21 407 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN404_RS09910GCF_002562035#CN404_RS09910
HKClassicCurrent focus
18 951-20 693 nt · Reverse (-)
CN404_RS09915GCF_002562035#CN404_RS09915
RROmpR
20 703-21 407 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002562035#CN404_RS09910The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1162832
Simplified PFAM architecture for HKOC_1162832
PFAM domain coverage: 168 / 580 aa (29.0%)
1 aa580 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-414] | HATPase_c[471-579]
- Domain count: 2
- Matched identifier: HKOC_1162832
- Positioned domains: HisKA 356-414 ; HATPase_c 471-579
Cluster members and taxonomy
Representative gene: GCF_002562035#CN404_RS09910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002562035
AssemblyASM256203v1 · Scaffoldhaploid
Genome composition5 828 945 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 107 · HK 58 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key