1 HAMP#1
56-125 aa · 70 aa · 19.6% of protein
Raw token
HAMP:56:0.0000000103:125:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN309_RS07995
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002560465
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002560465#CN309_RS07995Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 358 aa (64.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-200 aa · 64 aa · 17.9% of protein
Raw token
HisKA:137:5.36e-16:200:64:643 HATPase_c#3
250-347 aa · 98 aa · 27.4% of protein
Raw token
HATPase_c:250:0.0000000000000021:347:98:109- Raw architecture: HAMP:56:0.0000000103:125:70:69#HisKA:137:5.36e-16:200:64:64#HATPase_c:250:0.0000000000000021:347:98:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002560465::NZ_NTRJ01000013.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87904-89663Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN309_07995RefSeq proteinWP_065229072.1
Context group ID
GCF_002560465::NZ_NTRJ01000013.1::G00013Context members
CN309_RS07990CN309_RS07995
Partner locus tags
CN309_RS07990CN309_RS07995
Partner old locus tags
CN309_07990CN309_07995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065229072.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN309_RS07995Primary locus identifier stored in the genes table.
Old locus tagCN309_07995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTRJ01000013.1Sequence record reported by the local genomic context database.
Genomic interval88 587-89 663 nt1 077 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 904-89 663 ntGCF_002560465::NZ_NTRJ01000013.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002560465::NZ_NTRJ01000013.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTRJ01000013.1All displayed genes belong to this local TCS context.
Neighborhood span87 904-89 663 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 904 nt89 663 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN309_RS07990GCF_002560465#CN309_RS07990
RROmpR
87 904-88 590 nt · Forward (+)
CN309_RS07995GCF_002560465#CN309_RS07995
HKClassicCurrent focus
88 587-89 663 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001678165#A9L49_RS12660Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2759668
Simplified PFAM architecture for HKOC_2759668
PFAM domain coverage: 211 / 358 aa (58.9%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[82-124] | HisKA[137-200] | HATPase_c[250-353]
- Domain count: 3
- Matched identifier: HKOC_2759668
- Positioned domains: HAMP 82-124 ; HisKA 137-200 ; HATPase_c 250-353
Cluster members and taxonomy
Representative gene: GCF_001678165#A9L49_RS12660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002560465
AssemblyASM256046v1 · Scaffoldhaploid
Genome composition6 166 584 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 129 · HK 69 · RR 59CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key