1 Response_reg#1
6-114 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:6:4.81e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN309_RS04560
Response regulator OmpR family
Bacillus thuringiensis · GCF_002560465
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002560465#CN309_RS04560Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:154:1.17e-32:231:78:77- Raw architecture: Response_reg:6:4.81e-35:114:110:111#Trans_reg_C:154:1.17e-32:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002560465::NZ_NTRJ01000009.1::G00076
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82375-84831Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN309_04560RefSeq proteinWP_029442109.1
Context group ID
GCF_002560465::NZ_NTRJ01000009.1::G00076Context members
CN309_RS04555CN309_RS04560
Partner locus tags
CN309_RS04555CN309_RS04560
Partner old locus tags
CN309_04555CN309_04560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029442109.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X7FWU1Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X7FWU1_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN309_RS04560Primary locus identifier stored in the genes table.
Old locus tagCN309_04560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTRJ01000009.1Sequence record reported by the local genomic context database.
Genomic interval84 127-84 831 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span82 375-84 831 ntGCF_002560465::NZ_NTRJ01000009.1::G00076
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002560465::NZ_NTRJ01000009.1::G00076Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTRJ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span82 375-84 831 nt2 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 375 nt84 831 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN309_RS04555GCF_002560465#CN309_RS04555
HKClassic
82 375-84 117 nt · Reverse (-)
CN309_RS04560GCF_002560465#CN309_RS04560
RROmpRCurrent focus
84 127-84 831 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000978375#FORC5_RS05695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1050514
Simplified PFAM architecture for RROC_1050514
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[157-231]
- Domain count: 2
- Matched identifier: RROC_1050514
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 157-231 ; Trans_reg_C 157-231
Cluster members and taxonomy
Representative gene: GCF_000978375#FORC5_RS05695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002560465
AssemblyASM256046v1 · Scaffoldhaploid
Genome composition6 166 584 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 129 · HK 69 · RR 59CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key