1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:1.03e-23:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN283_RS17440
Response regulator NarL family
Bacillus thuringiensis · GCF_002559855
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002559855#CN283_RS17440Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:3.28e-27:203:58:58- Raw architecture: Response_reg:4:1.03e-23:116:113:111#HTH_LUXR:146:3.28e-27:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002559855::NZ_NTQE01000027.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span306713-308397Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN283_17440RefSeq proteinWP_098255839.1
Context group ID
GCF_002559855::NZ_NTQE01000027.1::G00026Context members
CN283_RS17440CN283_RS17445
Partner locus tags
CN283_RS17440CN283_RS17445
Partner old locus tags
CN283_17440CN283_17445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098255839.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN283_RS17440Primary locus identifier stored in the genes table.
Old locus tagCN283_17440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTQE01000027.1Sequence record reported by the local genomic context database.
Genomic interval306 713-307 345 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span306 713-308 397 ntGCF_002559855::NZ_NTQE01000027.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002559855::NZ_NTQE01000027.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTQE01000027.1All displayed genes belong to this local TCS context.
Neighborhood span306 713-308 397 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
306 713 nt308 397 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN283_RS17440GCF_002559855#CN283_RS17440
RRNarLCurrent focus
306 713-307 345 nt · Reverse (-)
CN283_RS17445GCF_002559855#CN283_RS17445
HKClassic
307 342-308 397 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002559855#CN283_RS17440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2023546
Simplified PFAM architecture for RROC_2023546
PFAM domain coverage: 169 / 210 aa (80.5%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_2023546
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_002559855#CN283_RS17440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002559855
AssemblyASM255985v1 · Scaffoldhaploid
Genome composition5 907 020 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 123 · HK 66 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key