1 HisKA#1
258-324 aa · 67 aa · 14.0% of protein
Raw token
HisKA:258:0.00000000126:324:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN273_RS00620
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002559825
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002559825#CN273_RS00620Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 480 aa (32.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
369-458 aa · 90 aa · 18.8% of protein
Raw token
HATPase_c:369:5.83e-21:458:90:109- Raw architecture: HisKA:258:0.00000000126:324:67:64#HATPase_c:369:5.83e-21:458:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002559825::NZ_NTQD01000002.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95296-97381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN273_00620RefSeq proteinWP_098236330.1
Context group ID
GCF_002559825::NZ_NTQD01000002.1::G00026Context members
CN273_RS00615CN273_RS00620
Partner locus tags
CN273_RS00615CN273_RS00620
Partner old locus tags
CN273_00615CN273_00620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098236330.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN273_RS00620Primary locus identifier stored in the genes table.
Old locus tagCN273_00620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTQD01000002.1Sequence record reported by the local genomic context database.
Genomic interval95 939-97 381 nt1 443 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 296-97 381 ntGCF_002559825::NZ_NTQD01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002559825::NZ_NTQD01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTQD01000002.1All displayed genes belong to this local TCS context.
Neighborhood span95 296-97 381 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 296 nt97 381 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN273_RS00615GCF_002559825#CN273_RS00615
RROmpR
95 296-95 961 nt · Forward (+)
CN273_RS00620GCF_002559825#CN273_RS00620
HKClassicCurrent focus
95 939-97 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002559825#CN273_RS00620The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1621077
Simplified PFAM architecture for HKOC_1621077
PFAM domain coverage: 173 / 480 aa (36.0%)
1 aa480 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[259-323] | HATPase_c[370-477]
- Domain count: 2
- Matched identifier: HKOC_1621077
- Positioned domains: HisKA 259-323 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_002559825#CN273_RS00620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002559825
AssemblyASM255982v1 · Scaffoldhaploid
Genome composition6 101 693 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 123 · HK 66 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key