1 Response_reg#1
5-114 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:5:5.66e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN486_RS03280
Response regulator OmpR family
Bacillus thuringiensis · GCF_002558595
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002558595#CN486_RS03280Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.4% of protein
Raw token
Trans_reg_C:153:3.35e-37:229:77:77- Raw architecture: Response_reg:5:5.66e-37:114:111:111#Trans_reg_C:153:3.35e-37:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002558595::NZ_NTYI01000005.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29087-31193Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN486_03285RefSeq proteinWP_098276462.1
Context group ID
GCF_002558595::NZ_NTYI01000005.1::G00051Context members
CN486_RS03275CN486_RS03280
Partner locus tags
CN486_RS03275CN486_RS03280
Partner old locus tags
CN486_03280CN486_03285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098276462.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN486_RS03280Primary locus identifier stored in the genes table.
Old locus tagCN486_03285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTYI01000005.1Sequence record reported by the local genomic context database.
Genomic interval30 477-31 193 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 087-31 193 ntGCF_002558595::NZ_NTYI01000005.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002558595::NZ_NTYI01000005.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTYI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span29 087-31 193 nt2 107 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 087 nt31 193 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN486_RS03275GCF_002558595#CN486_RS03275
HKClassic
29 087-30 487 nt · Reverse (-)
CN486_RS03280GCF_002558595#CN486_RS03280
RROmpRCurrent focus
30 477-31 193 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002558595#CN486_RS03280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0938721
Simplified PFAM architecture for RROC_0938721
PFAM domain coverage: 186 / 238 aa (78.2%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0938721
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_002558595#CN486_RS03280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002558595
AssemblyASM255859v1 · Scaffoldhaploid
Genome composition6 150 353 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 127 · HK 67 · RR 59CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key