1 HisKA#1
258-324 aa · 67 aa · 14.0% of protein
Raw token
HisKA:258:0.00000000115:324:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN486_RS01410
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002558595
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002558595#CN486_RS01410Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 480 aa (32.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
369-458 aa · 90 aa · 18.8% of protein
Raw token
HATPase_c:369:5.48e-21:458:90:109- Raw architecture: HisKA:258:0.00000000115:324:67:64#HATPase_c:369:5.48e-21:458:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002558595::NZ_NTYI01000002.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span97143-99228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN486_01410RefSeq proteinWP_000201961.1
Context group ID
GCF_002558595::NZ_NTYI01000002.1::G00024Context members
CN486_RS01405CN486_RS01410
Partner locus tags
CN486_RS01405CN486_RS01410
Partner old locus tags
CN486_01405CN486_01410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000201961.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN5XUB8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN5XUB8_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN486_RS01410Primary locus identifier stored in the genes table.
Old locus tagCN486_01410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTYI01000002.1Sequence record reported by the local genomic context database.
Genomic interval97 786-99 228 nt1 443 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span97 143-99 228 ntGCF_002558595::NZ_NTYI01000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002558595::NZ_NTYI01000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTYI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span97 143-99 228 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 143 nt99 228 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN486_RS01405GCF_002558595#CN486_RS01405
RROmpR
97 143-97 808 nt · Forward (+)
CN486_RS01410GCF_002558595#CN486_RS01410
HKClassicCurrent focus
97 786-99 228 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS21210Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1619298
Simplified PFAM architecture for HKOC_1619298
PFAM domain coverage: 173 / 480 aa (36.0%)
1 aa480 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[259-323] | HATPase_c[370-477]
- Domain count: 2
- Matched identifier: HKOC_1619298
- Positioned domains: HisKA 259-323 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS21210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002558595
AssemblyASM255859v1 · Scaffoldhaploid
Genome composition6 150 353 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 127 · HK 67 · RR 59CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key