1 Response_reg#1
5-115 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:5:9.76e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN486_RS02485
Response regulator OmpR family
Bacillus thuringiensis · GCF_002558595
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002558595#CN486_RS02485Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 239 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:156:2.99e-38:232:77:77- Raw architecture: Response_reg:5:9.76e-38:115:111:111#Trans_reg_C:156:2.99e-38:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002558595::NZ_NTYI01000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43303-45778Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN486_02490RefSeq proteinWP_001065220.1
Context group ID
GCF_002558595::NZ_NTYI01000003.1::G00035Context members
CN486_RS02480CN486_RS02485
Partner locus tags
CN486_RS02480CN486_RS02485
Partner old locus tags
CN486_02485CN486_02490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001065220.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3HVW5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3HVW5_BACTIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN486_RS02485Primary locus identifier stored in the genes table.
Old locus tagCN486_02490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTYI01000003.1Sequence record reported by the local genomic context database.
Genomic interval45 059-45 778 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 303-45 778 ntGCF_002558595::NZ_NTYI01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002558595::NZ_NTYI01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTYI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span43 303-45 778 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 303 nt45 778 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN486_RS02480GCF_002558595#CN486_RS02480
HKClassic
43 303-45 066 nt · Reverse (-)
CN486_RS02485GCF_002558595#CN486_RS02485
RROmpRCurrent focus
45 059-45 778 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS22910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905298
Simplified PFAM architecture for RROC_0905298
PFAM domain coverage: 188 / 239 aa (78.7%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_0905298
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS22910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002558595
AssemblyASM255859v1 · Scaffoldhaploid
Genome composition6 150 353 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 127 · HK 67 · RR 59CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key