1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:2.27e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN562_RS08045
Response regulator OmpR family
Bacillus wiedmannii · GCF_002556905
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002556905#CN562_RS08045Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:148:2.99e-31:224:77:77- Raw architecture: Response_reg:4:2.27e-37:114:111:111#Trans_reg_C:148:2.99e-31:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002556905::NZ_NUAT01000011.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43562-45609Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN562_08045RefSeq proteinWP_046954999.1
Context group ID
GCF_002556905::NZ_NUAT01000011.1::G00003Context members
CN562_RS08045CN562_RS08050
Partner locus tags
CN562_RS08045CN562_RS08050
Partner old locus tags
CN562_08045CN562_08050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_046954999.1Primary protein accession used for annex mappings.
UniProt accessionA0A0G8EZY5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0G8EZY5_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN562_RS08045Primary locus identifier stored in the genes table.
Old locus tagCN562_08045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUAT01000011.1Sequence record reported by the local genomic context database.
Genomic interval43 562-44 251 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 562-45 609 ntGCF_002556905::NZ_NUAT01000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002556905::NZ_NUAT01000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUAT01000011.1All displayed genes belong to this local TCS context.
Neighborhood span43 562-45 609 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 562 nt45 609 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN562_RS08045GCF_002556905#CN562_RS08045
RROmpRCurrent focus
43 562-44 251 nt · Forward (+)
CN562_RS08050GCF_002556905#CN562_RS08050
HKClassic
44 248-45 609 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001008565#B4077_RS11140Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1252470
Simplified PFAM architecture for RROC_1252470
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1252470
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_001008565#B4077_RS11140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002556905
AssemblyASM255690v1 · Scaffoldhaploid
Genome composition5 546 264 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 118 · HK 63 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key