1 HAMP#1
190-259 aa · 70 aa · 11.4% of protein
Raw token
HAMP:190:1.68e-16:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN562_RS02080
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002556905
ClassHKTypeClassicLength613 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002556905#CN562_RS02080Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPPAS_9HisKAHATPase_c
Protein length613 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage346 / 613 aa (56.4%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa613 aa
Domain-by-domain annotation4 items
2 PAS_9#2
279-375 aa · 97 aa · 15.8% of protein
Raw token
PAS_9:279:0.00000000607:375:102:1023 HisKA#3
382-448 aa · 67 aa · 10.9% of protein
Raw token
HisKA:382:6.43e-18:448:67:644 HATPase_c#4
494-605 aa · 112 aa · 18.3% of protein
Raw token
HATPase_c:494:9e-36:605:112:109- Raw architecture: HAMP:190:1.68e-16:259:70:69#PAS_9:279:0.00000000607:375:102:102#HisKA:382:6.43e-18:448:67:64#HATPase_c:494:9e-36:605:112:109
- Domain description: 1 HAMP,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002556905::NZ_NUAT01000002.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103434-105986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN562_02080RefSeq proteinWP_048542845.1
Context group ID
GCF_002556905::NZ_NUAT01000002.1::G00040Context members
CN562_RS02080CN562_RS02085
Partner locus tags
CN562_RS02080CN562_RS02085
Partner old locus tags
CN562_02080CN562_02085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048542845.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B6DUC1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B6DUC1_9BACIDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN562_RS02080Primary locus identifier stored in the genes table.
Old locus tagCN562_02080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUAT01000002.1Sequence record reported by the local genomic context database.
Genomic interval103 434-105 275 nt1 842 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 434-105 986 ntGCF_002556905::NZ_NUAT01000002.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002556905::NZ_NUAT01000002.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUAT01000002.1All displayed genes belong to this local TCS context.
Neighborhood span103 434-105 986 nt2 553 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 434 nt105 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN562_RS02080GCF_002556905#CN562_RS02080
HKClassicCurrent focus
103 434-105 275 nt · Reverse (-)
CN562_RS02085GCF_002556905#CN562_RS02085
RROmpR
105 279-105 986 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS08645Use this link to inspect the representative gene detail.
PFAM architectureCache_WalK + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0994239
Simplified PFAM architecture for HKOC_0994239
PFAM domain coverage: 374 / 613 aa (61.0%)
1 aa613 aa
Cache_WalKHAMPPASHisKAHATPase_c
- Simplified architecture: Cache_WalK + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: Cache_WalK[80-174] | HAMP[207-259] | PAS[271-319] | HisKA[383-448] | HATPase_c[495-605]
- Domain count: 5
- Matched identifier: HKOC_0994239
- Positioned domains: Cache_WalK 80-174 ; HAMP 207-259 ; PAS 271-319 ; HisKA 383-448 ; HATPase_c 495-605
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS08645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002556905
AssemblyASM255690v1 · Scaffoldhaploid
Genome composition5 546 264 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 118 · HK 63 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key