1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:1.19e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN562_RS07935
Response regulator OmpR family
Bacillus wiedmannii · GCF_002556905
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002556905#CN562_RS07935Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.3% of protein
Raw token
Trans_reg_C:147:7.13e-28:221:76:77- Raw architecture: Response_reg:5:1.19e-39:114:111:111#Trans_reg_C:147:7.13e-28:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002556905::NZ_NUAT01000011.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20934-22678Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN562_07935RefSeq proteinWP_048543206.1
Context group ID
GCF_002556905::NZ_NUAT01000011.1::G00001Context members
CN562_RS07935CN562_RS07940
Partner locus tags
CN562_RS07935CN562_RS07940
Partner old locus tags
CN562_07935CN562_07940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_048543206.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN562_RS07935Primary locus identifier stored in the genes table.
Old locus tagCN562_07935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUAT01000011.1Sequence record reported by the local genomic context database.
Genomic interval20 934-21 611 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 934-22 678 ntGCF_002556905::NZ_NUAT01000011.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002556905::NZ_NUAT01000011.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUAT01000011.1All displayed genes belong to this local TCS context.
Neighborhood span20 934-22 678 nt1 745 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 934 nt22 678 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN562_RS07935GCF_002556905#CN562_RS07935
RROmpRCurrent focus
20 934-21 611 nt · Forward (+)
CN562_RS07940GCF_002556905#CN562_RS07940
HKClassic
21 608-22 678 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS10800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1469997
Simplified PFAM architecture for RROC_1469997
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1469997
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS10800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002556905
AssemblyASM255690v1 · Scaffoldhaploid
Genome composition5 546 264 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 118 · HK 63 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key