1 HAMP#1
158-229 aa · 72 aa · 15.9% of protein
Raw token
HAMP:158:0.000000000708:229:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN611_RS25710
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002555385
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002555385#CN611_RS25710Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 452 aa (54.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-300 aa · 68 aa · 15.0% of protein
Raw token
HisKA:233:0.0000000000000103:300:68:643 HATPase_c#3
343-449 aa · 107 aa · 23.7% of protein
Raw token
HATPase_c:343:6.16e-30:449:108:109- Raw architecture: HAMP:158:0.000000000708:229:72:69#HisKA:233:0.0000000000000103:300:68:64#HATPase_c:343:6.16e-30:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002555385::NZ_NUDL01000100.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23870-25915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN611_25710RefSeq proteinWP_098103312.1
Context group ID
GCF_002555385::NZ_NUDL01000100.1::G00001Context members
CN611_RS25710CN611_RS25715
Partner locus tags
CN611_RS25710CN611_RS25715
Partner old locus tags
CN611_25710CN611_25715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_098103312.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A8BHD0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A8BHD0_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN611_RS25710Primary locus identifier stored in the genes table.
Old locus tagCN611_25710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUDL01000100.1Sequence record reported by the local genomic context database.
Genomic interval23 870-25 228 nt1 359 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 870-25 915 ntGCF_002555385::NZ_NUDL01000100.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002555385::NZ_NUDL01000100.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUDL01000100.1All displayed genes belong to this local TCS context.
Neighborhood span23 870-25 915 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 870 nt25 915 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN611_RS25710GCF_002555385#CN611_RS25710
HKClassicCurrent focus
23 870-25 228 nt · Reverse (-)
CN611_RS25715GCF_002555385#CN611_RS25715
RROmpR
25 232-25 915 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555385#CN611_RS25710The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1939740
Simplified PFAM architecture for HKOC_1939740
PFAM domain coverage: 346 / 452 aa (76.5%)
1 aa452 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[30-151] | HAMP[176-228] | HisKA[234-297] | HATPase_c[343-449]
- Domain count: 4
- Matched identifier: HKOC_1939740
- Positioned domains: ArlS_N 30-151 ; HAMP 176-228 ; HisKA 234-297 ; HATPase_c 343-449
Cluster members and taxonomy
Representative gene: GCF_002555385#CN611_RS25710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002555385
AssemblyASM255538v1 · Scaffoldhaploid
Genome composition6 101 045 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 131 · HK 69 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key