1 Response_reg#1
4-115 aa · 112 aa · 51.4% of protein
Raw token
Response_reg:4:8.57e-31:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN600_RS26025
Response regulator NarL family
Bacillus mycoides · GCF_002554935
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002554935#CN600_RS26025Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 218 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-209 aa · 58 aa · 26.6% of protein
Raw token
HTH_LUXR:152:2.91e-22:209:58:58- Raw architecture: Response_reg:4:8.57e-31:115:112:111#HTH_LUXR:152:2.91e-22:209:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002554935::NZ_NUCL01000046.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12263-14109Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN600_26035RefSeq proteinWP_063218196.1
Context group ID
GCF_002554935::NZ_NUCL01000046.1::G00056Context members
CN600_RS26020CN600_RS26025
Partner locus tags
CN600_RS26020CN600_RS26025
Partner old locus tags
CN600_26030CN600_26035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063218196.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TI39Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TI39_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN600_RS26025Primary locus identifier stored in the genes table.
Old locus tagCN600_26035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUCL01000046.1Sequence record reported by the local genomic context database.
Genomic interval13 453-14 109 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 263-14 109 ntGCF_002554935::NZ_NUCL01000046.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002554935::NZ_NUCL01000046.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUCL01000046.1All displayed genes belong to this local TCS context.
Neighborhood span12 263-14 109 nt1 847 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 263 nt14 109 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN600_RS26020GCF_002554935#CN600_RS26020
HKClassic
12 263-13 456 nt · Forward (+)
CN600_RS26025GCF_002554935#CN600_RS26025
RRNarLCurrent focus
13 453-14 109 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014585#BW897_RS27935Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1817405
Simplified PFAM architecture for RROC_1817405
PFAM domain coverage: 168 / 218 aa (77.1%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[154-209]
- Domain count: 2
- Matched identifier: RROC_1817405
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 154-209 ; GerE 154-209
Cluster members and taxonomy
Representative gene: GCF_002014585#BW897_RS27935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002554935
AssemblyASM255493v1 · Scaffoldhaploid
Genome composition5 810 988 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 136 · HK 74 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key