1 HisKA_3#1
149-216 aa · 68 aa · 19.4% of protein
Raw token
HisKA_3:149:1.93e-22:216:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN600_RS02220
Histidine kinase, Classic
Bacillus mycoides · GCF_002554935
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002554935#CN600_RS02220Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 351 aa (45.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-342 aa · 91 aa · 25.9% of protein
Raw token
HATPase_c:252:4.66e-16:342:106:109- Raw architecture: HisKA_3:149:1.93e-22:216:68:68#HATPase_c:252:4.66e-16:342:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002554935::NZ_NUCL01000001.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span405486-407170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN600_02220RefSeq proteinWP_002011673.1
Context group ID
GCF_002554935::NZ_NUCL01000001.1::G00023Context members
CN600_RS02220CN600_RS02225
Partner locus tags
CN600_RS02220CN600_RS02225
Partner old locus tags
CN600_02220CN600_02225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002011673.1Primary protein accession used for annex mappings.
UniProt accessionR8HT51Primary UniProt accession resolved in the annex database.
UniProt IDR8HT51_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN600_RS02220Primary locus identifier stored in the genes table.
Old locus tagCN600_02220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUCL01000001.1Sequence record reported by the local genomic context database.
Genomic interval405 486-406 541 nt1 056 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span405 486-407 170 ntGCF_002554935::NZ_NUCL01000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002554935::NZ_NUCL01000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUCL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span405 486-407 170 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
405 486 nt407 170 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN600_RS02220GCF_002554935#CN600_RS02220
HKClassicCurrent focus
405 486-406 541 nt · Forward (+)
CN600_RS02225GCF_002554935#CN600_RS02225
RRNarL
406 538-407 170 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS06160Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2792513
Simplified PFAM architecture for HKOC_2792513
PFAM domain coverage: 160 / 351 aa (45.6%)
1 aa351 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[149-216] | HATPase_c[252-343]
- Domain count: 2
- Matched identifier: HKOC_2792513
- Positioned domains: HisKA_3 149-216 ; HATPase_c 252-343
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS06160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002554935
AssemblyASM255493v1 · Scaffoldhaploid
Genome composition5 810 988 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 136 · HK 74 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key