1 HAMP#1
64-131 aa · 68 aa · 18.4% of protein
Raw token
HAMP:64:0.00000139:131:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN600_RS04995
Histidine kinase, Classic
Bacillus mycoides · GCF_002554935
ClassHKTypeClassicLength369 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002554935#CN600_RS04995Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length369 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 369 aa (67.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa369 aa
Domain-by-domain annotation3 items
2 HisKA#2
142-209 aa · 68 aa · 18.4% of protein
Raw token
HisKA:142:0.00000000000476:209:68:643 HATPase_c#3
254-365 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:254:2.57e-27:365:113:109- Raw architecture: HAMP:64:0.00000139:131:68:69#HisKA:142:0.00000000000476:209:68:64#HATPase_c:254:2.57e-27:365:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002554935::NZ_NUCL01000003.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7409-9209Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN600_05000RefSeq proteinWP_098167464.1
Context group ID
GCF_002554935::NZ_NUCL01000003.1::G00054Context members
CN600_RS04990CN600_RS04995
Partner locus tags
CN600_RS04990CN600_RS04995
Partner old locus tags
CN600_04995CN600_05000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098167464.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN600_RS04995Primary locus identifier stored in the genes table.
Old locus tagCN600_05000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUCL01000003.1Sequence record reported by the local genomic context database.
Genomic interval8 100-9 209 nt1 110 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 409-9 209 ntGCF_002554935::NZ_NUCL01000003.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002554935::NZ_NUCL01000003.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUCL01000003.1All displayed genes belong to this local TCS context.
Neighborhood span7 409-9 209 nt1 801 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 409 nt9 209 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN600_RS04990GCF_002554935#CN600_RS04990
RROmpR
7 409-8 107 nt · Forward (+)
CN600_RS04995GCF_002554935#CN600_RS04995
HKClassicCurrent focus
8 100-9 209 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002554935#CN600_RS04995The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2692492
Simplified PFAM architecture for HKOC_2692492
PFAM domain coverage: 224 / 369 aa (60.7%)
1 aa369 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-130] | HisKA[143-208] | HATPase_c[254-364]
- Domain count: 3
- Matched identifier: HKOC_2692492
- Positioned domains: HAMP 84-130 ; HisKA 143-208 ; HATPase_c 254-364
Cluster members and taxonomy
Representative gene: GCF_002554935#CN600_RS04995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002554935
AssemblyASM255493v1 · Scaffoldhaploid
Genome composition5 810 988 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 136 · HK 74 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key