1 HisKA#1
258-324 aa · 67 aa · 14.0% of protein
Raw token
HisKA:258:0.00000000082:324:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON35_RS13125
Histidine kinase, Classic
Bacillus cereus · GCF_002553255
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553255#CON35_RS13125Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 480 aa (32.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
369-458 aa · 90 aa · 18.8% of protein
Raw token
HATPase_c:369:6.78e-21:458:90:109- Raw architecture: HisKA:258:0.00000000082:324:67:64#HATPase_c:369:6.78e-21:458:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553255::NZ_NVMR01000062.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84661-86746Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON35_13125RefSeq proteinWP_098939208.1
Context group ID
GCF_002553255::NZ_NVMR01000062.1::G00050Context members
CON35_RS13120CON35_RS13125
Partner locus tags
CON35_RS13120CON35_RS13125
Partner old locus tags
CON35_13120CON35_13125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098939208.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON35_RS13125Primary locus identifier stored in the genes table.
Old locus tagCON35_13125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVMR01000062.1Sequence record reported by the local genomic context database.
Genomic interval85 304-86 746 nt1 443 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 661-86 746 ntGCF_002553255::NZ_NVMR01000062.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553255::NZ_NVMR01000062.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVMR01000062.1All displayed genes belong to this local TCS context.
Neighborhood span84 661-86 746 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 661 nt86 746 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON35_RS13120GCF_002553255#CON35_RS13120
RROmpR
84 661-85 326 nt · Forward (+)
CON35_RS13125GCF_002553255#CON35_RS13125
HKClassicCurrent focus
85 304-86 746 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553255#CON35_RS13125The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1621062
Simplified PFAM architecture for HKOC_1621062
PFAM domain coverage: 173 / 480 aa (36.0%)
1 aa480 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[259-323] | HATPase_c[370-477]
- Domain count: 2
- Matched identifier: HKOC_1621062
- Positioned domains: HisKA 259-323 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_002553255#CON35_RS13125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002553255
AssemblyASM255325v1 · Scaffoldhaploid
Genome composition5 910 033 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 103 · HK 55 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key