1 sCache_like#1
35-149 aa · 115 aa · 19.5% of protein
Raw token
sCache_like:35:9.69e-30:149:117:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON35_RS03440
Histidine kinase, Classic
Bacillus cereus · GCF_002553255
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553255#CON35_RS03440Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPASHisKAHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage470 / 589 aa (79.8%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation5 items
2 HAMP#2
165-234 aa · 70 aa · 11.9% of protein
Raw token
HAMP:165:0.0000000000094:234:70:693 PAS#3
245-351 aa · 107 aa · 18.2% of protein
Raw token
PAS:245:0.0000000000000371:351:112:1134 HisKA#4
360-427 aa · 68 aa · 11.5% of protein
Raw token
HisKA:360:1.72e-21:427:68:645 HATPase_c#5
472-581 aa · 110 aa · 18.7% of protein
Raw token
HATPase_c:472:7.5e-36:581:110:109- Raw architecture: sCache_like:35:9.69e-30:149:117:114#HAMP:165:0.0000000000094:234:70:69#PAS:245:0.0000000000000371:351:112:113#HisKA:360:1.72e-21:427:68:64#HATPase_c:472:7.5e-36:581:110:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553255::NZ_NVMR01000014.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58231-60712Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON35_03440RefSeq proteinWP_098938307.1
Context group ID
GCF_002553255::NZ_NVMR01000014.1::G00009Context members
CON35_RS03435CON35_RS03440
Partner locus tags
CON35_RS03435CON35_RS03440
Partner old locus tags
CON35_03435CON35_03440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098938307.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON35_RS03440Primary locus identifier stored in the genes table.
Old locus tagCON35_03440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVMR01000014.1Sequence record reported by the local genomic context database.
Genomic interval58 943-60 712 nt1 770 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 231-60 712 ntGCF_002553255::NZ_NVMR01000014.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553255::NZ_NVMR01000014.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVMR01000014.1All displayed genes belong to this local TCS context.
Neighborhood span58 231-60 712 nt2 482 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 231 nt60 712 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON35_RS03435GCF_002553255#CON35_RS03435
RROmpR
58 231-58 950 nt · Forward (+)
CON35_RS03440GCF_002553255#CON35_RS03440
HKClassicCurrent focus
58 943-60 712 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553255#CON35_RS03440The current gene is the representative for this cluster.
PFAM architecturesCache_like + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1115796
Simplified PFAM architecture for HKOC_1115796
PFAM domain coverage: 449 / 589 aa (76.2%)
1 aa589 aa
sCache_likeHAMPPASHisKAHATPase_c
- Simplified architecture: sCache_like + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: sCache_like[33-149] | HAMP[188-234] | PAS[245-351] | HisKA[360-426] | HATPase_c[472-582]
- Domain count: 5
- Matched identifier: HKOC_1115796
- Positioned domains: sCache_like 33-149 ; HAMP 188-234 ; PAS 245-351 ; HisKA 360-426 ; HATPase_c 472-582
Cluster members and taxonomy
Representative gene: GCF_002553255#CON35_RS03440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002553255
AssemblyASM255325v1 · Scaffoldhaploid
Genome composition5 910 033 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 103 · HK 55 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key