1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:2.18e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON35_RS11540
Response regulator OmpR family
Bacillus cereus · GCF_002553255
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553255#CON35_RS11540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 225 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-220 aa · 77 aa · 34.2% of protein
Raw token
Trans_reg_C:144:6.78e-27:220:77:77- Raw architecture: Response_reg:4:2.18e-37:113:111:111#Trans_reg_C:144:6.78e-27:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553255::NZ_NVMR01000059.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62251-64331Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON35_11540RefSeq proteinWP_000565484.1
Context group ID
GCF_002553255::NZ_NVMR01000059.1::G00045Context members
CON35_RS11540CON35_RS11545
Partner locus tags
CON35_RS11540CON35_RS11545
Partner old locus tags
CON35_11540CON35_11545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000565484.1Primary protein accession used for annex mappings.
UniProt accessionW8Y6N0Primary UniProt accession resolved in the annex database.
UniProt IDW8Y6N0_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON35_RS11540Primary locus identifier stored in the genes table.
Old locus tagCON35_11540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVMR01000059.1Sequence record reported by the local genomic context database.
Genomic interval62 251-62 928 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 251-64 331 ntGCF_002553255::NZ_NVMR01000059.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553255::NZ_NVMR01000059.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVMR01000059.1All displayed genes belong to this local TCS context.
Neighborhood span62 251-64 331 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 251 nt64 331 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON35_RS11540GCF_002553255#CON35_RS11540
RROmpRCurrent focus
62 251-62 928 nt · Forward (+)
CON35_RS11545GCF_002553255#CON35_RS11545
HKClassic
62 940-64 331 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160935#BCERE0005_RS03055Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1463352
Simplified PFAM architecture for RROC_1463352
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1463352
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000160935#BCERE0005_RS03055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002553255
AssemblyASM255325v1 · Scaffoldhaploid
Genome composition5 910 033 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 103 · HK 55 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key