1 HAMP#1
180-249 aa · 70 aa · 14.4% of protein
Raw token
HAMP:180:0.000000000806:249:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON35_RS09880
Histidine kinase, Classic
Bacillus cereus · GCF_002553255
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553255#CON35_RS09880Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 486 aa (50.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-324 aa · 64 aa · 13.2% of protein
Raw token
HisKA:261:0.00000000000859:324:64:643 HATPase_c#3
373-481 aa · 109 aa · 22.4% of protein
Raw token
HATPase_c:373:3.86e-18:481:112:109- Raw architecture: HAMP:180:0.000000000806:249:70:69#HisKA:261:0.00000000000859:324:64:64#HATPase_c:373:3.86e-18:481:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553255::NZ_NVMR01000051.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7513-9656Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON35_09880RefSeq proteinWP_000567229.1
Context group ID
GCF_002553255::NZ_NVMR01000051.1::G00041Context members
CON35_RS09880CON35_RS09885
Partner locus tags
CON35_RS09880CON35_RS09885
Partner old locus tags
CON35_09880CON35_09885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000567229.1Primary protein accession used for annex mappings.
UniProt accessionB7HAE3Primary UniProt accession resolved in the annex database.
UniProt IDB7HAE3_BACC4Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON35_RS09880Primary locus identifier stored in the genes table.
Old locus tagCON35_09880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVMR01000051.1Sequence record reported by the local genomic context database.
Genomic interval7 513-8 973 nt1 461 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 513-9 656 ntGCF_002553255::NZ_NVMR01000051.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553255::NZ_NVMR01000051.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVMR01000051.1All displayed genes belong to this local TCS context.
Neighborhood span7 513-9 656 nt2 144 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 513 nt9 656 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON35_RS09880GCF_002553255#CON35_RS09880
HKClassicCurrent focus
7 513-8 973 nt · Reverse (-)
CON35_RS09885GCF_002553255#CON35_RS09885
RROmpR
8 970-9 656 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021205#BCB4264_RS15600Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1567107
Simplified PFAM architecture for HKOC_1567107
PFAM domain coverage: 220 / 486 aa (45.3%)
1 aa486 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[201-249] | HisKA[261-324] | HATPase_c[374-480]
- Domain count: 3
- Matched identifier: HKOC_1567107
- Positioned domains: HAMP 201-249 ; HisKA 261-324 ; HATPase_c 374-480
Cluster members and taxonomy
Representative gene: GCF_000021205#BCB4264_RS15600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002553255
AssemblyASM255325v1 · Scaffoldhaploid
Genome composition5 910 033 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 103 · HK 55 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key