1 HisKA#1
154-217 aa · 64 aa · 16.7% of protein
Raw token
HisKA:154:0.00000000000837:217:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON55_RS21930
Histidine kinase, Classic
Bacillus toyonensis · GCF_002552055
ClassHKTypeClassicLength384 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002552055#CON55_RS21930Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length384 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 384 aa (45.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa384 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
266-374 aa · 109 aa · 28.4% of protein
Raw token
HATPase_c:266:3.32e-24:374:111:109- Raw architecture: HisKA:154:0.00000000000837:217:64:64#HATPase_c:266:3.32e-24:374:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002552055::NZ_NVNX01000056.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49367-51206Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON55_21935RefSeq proteinWP_000791892.1
Context group ID
GCF_002552055::NZ_NVNX01000056.1::G00040Context members
CON55_RS21930CON55_RS21935
Partner locus tags
CON55_RS21930CON55_RS21935
Partner old locus tags
CON55_21935CON55_21940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000791892.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36SXI5Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36SXI5_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON55_RS21930Primary locus identifier stored in the genes table.
Old locus tagCON55_21935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNX01000056.1Sequence record reported by the local genomic context database.
Genomic interval49 367-50 521 nt1 155 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 367-51 206 ntGCF_002552055::NZ_NVNX01000056.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552055::NZ_NVNX01000056.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNX01000056.1All displayed genes belong to this local TCS context.
Neighborhood span49 367-51 206 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 367 nt51 206 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON55_RS21930GCF_002552055#CON55_RS21930
HKClassicCurrent focus
49 367-50 521 nt · Reverse (-)
CON55_RS21935GCF_002552055#CON55_RS21935
RROmpR
50 511-51 206 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552055#CON55_RS21930The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2574039
Simplified PFAM architecture for HKOC_2574039
PFAM domain coverage: 172 / 384 aa (44.8%)
1 aa384 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[155-217] | HATPase_c[266-374]
- Domain count: 2
- Matched identifier: HKOC_2574039
- Positioned domains: HisKA 155-217 ; HATPase_c 266-374
Cluster members and taxonomy
Representative gene: GCF_002552055#CON55_RS21930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002552055
AssemblyASM255205v1 · Scaffoldhaploid
Genome composition5 992 260 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key