1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:3.23e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON55_RS21675
Response regulator OmpR family
Bacillus toyonensis · GCF_002552055
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002552055#CON55_RS21675Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:152:3.74e-34:228:77:77- Raw architecture: Response_reg:5:3.23e-41:114:111:111#Trans_reg_C:152:3.74e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002552055::NZ_NVNX01000054.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66050-67815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON55_21680RefSeq proteinWP_000444083.1
Context group ID
GCF_002552055::NZ_NVNX01000054.1::G00039Context members
CON55_RS21670CON55_RS21675
Partner locus tags
CON55_RS21670CON55_RS21675
Partner old locus tags
CON55_21675CON55_21680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000444083.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36T022Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36T022_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON55_RS21675Primary locus identifier stored in the genes table.
Old locus tagCON55_21680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNX01000054.1Sequence record reported by the local genomic context database.
Genomic interval67 129-67 815 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 050-67 815 ntGCF_002552055::NZ_NVNX01000054.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552055::NZ_NVNX01000054.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNX01000054.1All displayed genes belong to this local TCS context.
Neighborhood span66 050-67 815 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 050 nt67 815 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON55_RS21670GCF_002552055#CON55_RS21670
HKClassic
66 050-67 132 nt · Reverse (-)
CON55_RS21675GCF_002552055#CON55_RS21675
RROmpRCurrent focus
67 129-67 815 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552055#CON55_RS21675The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1312372
Simplified PFAM architecture for RROC_1312372
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1312372
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_002552055#CON55_RS21675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002552055
AssemblyASM255205v1 · Scaffoldhaploid
Genome composition5 992 260 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key