1 PAS_4#1
238-317 aa · 80 aa · 9.9% of protein
Raw token
PAS_4:238:0.0000106:317:84:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON55_RS15290
Histidine kinase, Classic
Bacillus toyonensis · GCF_002552055
ClassHKTypeClassicLength811 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002552055#CON55_RS15290Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4PASHisKAHATPase_c
Protein length811 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage469 / 811 aa (57.8%)Merged over positioned domains only.
Domain description2 PAS_4,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa811 aa
Domain-by-domain annotation5 items
2 PAS#2
329-443 aa · 115 aa · 14.2% of protein
Raw token
PAS:329:0.0000000000000451:443:124:1133 PAS_4#3
472-581 aa · 110 aa · 13.6% of protein
Raw token
PAS_4:472:0.0000000000366:581:113:1104 HisKA#4
598-659 aa · 62 aa · 7.6% of protein
Raw token
HisKA:598:0.0000000000000137:659:62:645 HATPase_c#5
706-807 aa · 102 aa · 12.6% of protein
Raw token
HATPase_c:706:1.71e-24:807:105:109- Raw architecture: PAS_4:238:0.0000106:317:84:110#PAS:329:0.0000000000000451:443:124:113#PAS_4:472:0.0000000000366:581:113:110#HisKA:598:0.0000000000000137:659:62:64#HATPase_c:706:1.71e-24:807:105:109
- Domain description: 2 PAS_4,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002552055::NZ_NVNX01000031.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18416-20851Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON55_15295RefSeq proteinWP_097879260.1
Context group ID
GCF_002552055::NZ_NVNX01000031.1::G00024Context members
CON55_RS15290
Partner locus tags
CON55_RS15290
Partner old locus tags
CON55_15295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097879260.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON55_RS15290Primary locus identifier stored in the genes table.
Old locus tagCON55_15295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNX01000031.1Sequence record reported by the local genomic context database.
Genomic interval18 416-20 851 nt2 436 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 416-20 851 ntGCF_002552055::NZ_NVNX01000031.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552055::NZ_NVNX01000031.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNX01000031.1All displayed genes belong to this local TCS context.
Neighborhood span18 416-20 851 nt2 436 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 416 nt20 851 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CON55_RS15290GCF_002552055#CON55_RS15290
HKClassicCurrent focus
18 416-20 851 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552055#CON55_RS15290The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + PAS + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0538963
Simplified PFAM architecture for HKOC_0538963
PFAM domain coverage: 513 / 811 aa (63.3%)
1 aa811 aa
5TM-5TMR_LYTPASPASHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS + PAS + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[21-145] | PAS[329-443] | PAS[467-574] | HisKA[598-659] | HATPase_c[706-808]
- Domain count: 5
- Matched identifier: HKOC_0538963
- Positioned domains: 5TM-5TMR_LYT 21-145 ; PAS 329-443 ; PAS 467-574 ; HisKA 598-659 ; HATPase_c 706-808
Cluster members and taxonomy
Representative gene: GCF_002552055#CON55_RS15290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002552055
AssemblyASM255205v1 · Scaffoldhaploid
Genome composition5 992 260 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key