1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:1.03e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON55_RS05390
Response regulator OmpR family
Bacillus toyonensis · GCF_002552055
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002552055#CON55_RS05390Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 223 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 35.0% of protein
Raw token
Trans_reg_C:143:4.65e-27:220:78:77- Raw architecture: Response_reg:4:1.03e-35:113:111:111#Trans_reg_C:143:4.65e-27:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002552055::NZ_NVNX01000008.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53470-55651Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON55_05395RefSeq proteinWP_000238941.1
Context group ID
GCF_002552055::NZ_NVNX01000008.1::G00069Context members
CON55_RS05385CON55_RS05390
Partner locus tags
CON55_RS05385CON55_RS05390
Partner old locus tags
CON55_05390CON55_05395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000238941.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B6CME3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B6CME3_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON55_RS05390Primary locus identifier stored in the genes table.
Old locus tagCON55_05395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNX01000008.1Sequence record reported by the local genomic context database.
Genomic interval54 980-55 651 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 470-55 651 ntGCF_002552055::NZ_NVNX01000008.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552055::NZ_NVNX01000008.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNX01000008.1All displayed genes belong to this local TCS context.
Neighborhood span53 470-55 651 nt2 182 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 470 nt55 651 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON55_RS05385GCF_002552055#CON55_RS05385
HKClassic
53 470-54 915 nt · Reverse (-)
CON55_RS05390GCF_002552055#CON55_RS05390
RROmpRCurrent focus
54 980-55 651 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291095#IGK_RS23945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588534
Simplified PFAM architecture for RROC_1588534
PFAM domain coverage: 186 / 223 aa (83.4%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1588534
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000291095#IGK_RS23945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002552055
AssemblyASM255205v1 · Scaffoldhaploid
Genome composition5 992 260 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key