1 HAMP#1
164-233 aa · 70 aa · 14.4% of protein
Raw token
HAMP:164:0.00000000000000133:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON29_RS11065
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550605
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550605#CON29_RS11065Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 486 aa (50.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.6% of protein
Raw token
HisKA:258:0.000000000000951:323:66:643 HATPase_c#3
374-480 aa · 107 aa · 22.0% of protein
Raw token
HATPase_c:374:6.57e-17:480:108:109- Raw architecture: HAMP:164:0.00000000000000133:233:70:69#HisKA:258:0.000000000000951:323:66:64#HATPase_c:374:6.57e-17:480:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550605::NZ_NVMK01000015.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9281-11399Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON29_11070RefSeq proteinWP_001084893.1
Context group ID
GCF_002550605::NZ_NVMK01000015.1::G00006Context members
CON29_RS11060CON29_RS11065
Partner locus tags
CON29_RS11060CON29_RS11065
Partner old locus tags
CON29_11065CON29_11070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001084893.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3HPK7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3HPK7_BACTIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON29_RS11065Primary locus identifier stored in the genes table.
Old locus tagCON29_11070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVMK01000015.1Sequence record reported by the local genomic context database.
Genomic interval9 939-11 399 nt1 461 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 281-11 399 ntGCF_002550605::NZ_NVMK01000015.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550605::NZ_NVMK01000015.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVMK01000015.1All displayed genes belong to this local TCS context.
Neighborhood span9 281-11 399 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 281 nt11 399 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON29_RS11060GCF_002550605#CON29_RS11060
RROmpR
9 281-9 946 nt · Forward (+)
CON29_RS11065GCF_002550605#CON29_RS11065
HKClassicCurrent focus
9 939-11 399 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002148065#BK744_RS17780Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1528134
Simplified PFAM architecture for HKOC_1528134
PFAM domain coverage: 226 / 491 aa (46.0%)
1 aa491 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[373-480]
- Domain count: 3
- Matched identifier: HKOC_1528134
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 373-480
Cluster members and taxonomy
Representative gene: GCF_002148065#BK744_RS17780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550605
AssemblyASM255060v1 · Scaffoldhaploid
Genome composition5 585 308 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 108 · HK 59 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key