1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000104:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BK744_RS17780
Histidine kinase, Classic
Bacillus thuringiensis serovar zhaodongensis · GCF_002148065
ClassHKTypeClassicLength491 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002148065#BK744_RS17780Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length491 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 491 aa (49.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa491 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.4% of protein
Raw token
HisKA:258:0.000000000000782:323:66:643 HATPase_c#3
374-480 aa · 107 aa · 21.8% of protein
Raw token
HATPase_c:374:5.54e-17:480:108:109- Raw architecture: HAMP:164:0.00000000000000104:233:70:69#HisKA:258:0.000000000000782:323:66:64#HATPase_c:374:5.54e-17:480:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002148065::NZ_MOOR01000083.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114166-116299Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBK744_16860RefSeq proteinWP_086390560.1
Context group ID
GCF_002148065::NZ_MOOR01000083.1::G00033Context members
BK744_RS17775BK744_RS17780
Partner locus tags
BK744_RS17775BK744_RS17780
Partner old locus tags
BK744_16855BK744_16860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_086390560.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBK744_RS17780Primary locus identifier stored in the genes table.
Old locus tagBK744_16860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOOR01000083.1Sequence record reported by the local genomic context database.
Genomic interval114 824-116 299 nt1 476 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 166-116 299 ntGCF_002148065::NZ_MOOR01000083.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002148065::NZ_MOOR01000083.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOOR01000083.1All displayed genes belong to this local TCS context.
Neighborhood span114 166-116 299 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 166 nt116 299 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BK744_RS17775GCF_002148065#BK744_RS17775
RROmpR
114 166-114 831 nt · Forward (+)
BK744_RS17780GCF_002148065#BK744_RS17780
HKClassicCurrent focus
114 824-116 299 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002148065#BK744_RS17780The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1528134
Simplified PFAM architecture for HKOC_1528134
PFAM domain coverage: 226 / 491 aa (46.0%)
1 aa491 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[373-480]
- Domain count: 3
- Matched identifier: HKOC_1528134
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 373-480
Cluster members and taxonomy
Representative gene: GCF_002148065#BK744_RS17780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 180 896 · GCF_002148065
AssemblyASM214806v1 · Scaffoldhaploid
Genome composition6 240 466 bp · 35,0% GCBacillus thuringiensis serovar zhaodongensis
Signal transduction countsGenes 110 · HK 60 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key