1 Response_reg#1
4-114 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:4:1.78e-34:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON06_RS14615
Response regulator OmpR family
Bacillus cereus · GCF_002550375
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550375#CON06_RS14615Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-221 aa · 73 aa · 32.4% of protein
Raw token
Trans_reg_C:149:2.18e-24:221:76:77- Raw architecture: Response_reg:4:1.78e-34:114:112:111#Trans_reg_C:149:2.18e-24:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550375::NZ_NVLJ01000015.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7991-10515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON06_14620RefSeq proteinWP_097831073.1
Context group ID
GCF_002550375::NZ_NVLJ01000015.1::G00005Context members
CON06_RS14615CON06_RS14620
Partner locus tags
CON06_RS14615CON06_RS14620
Partner old locus tags
CON06_14620CON06_14625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097831073.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON06_RS14615Primary locus identifier stored in the genes table.
Old locus tagCON06_14620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVLJ01000015.1Sequence record reported by the local genomic context database.
Genomic interval7 991-8 668 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 991-10 515 ntGCF_002550375::NZ_NVLJ01000015.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550375::NZ_NVLJ01000015.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVLJ01000015.1All displayed genes belong to this local TCS context.
Neighborhood span7 991-10 515 nt2 525 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 991 nt10 515 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON06_RS14615GCF_002550375#CON06_RS14615
RROmpRCurrent focus
7 991-8 668 nt · Forward (+)
CON06_RS14620GCF_002550375#CON06_RS14620
HKClassic
8 668-10 515 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550375#CON06_RS14615The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1476356
Simplified PFAM architecture for RROC_1476356
PFAM domain coverage: 183 / 225 aa (81.3%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-221]
- Domain count: 2
- Matched identifier: RROC_1476356
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-221 ; Trans_reg_C 149-221
Cluster members and taxonomy
Representative gene: GCF_002550375#CON06_RS14615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002550375
AssemblyASM255037v1 · Scaffoldhaploid
Genome composition5 943 482 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key