1 HisKA#1
255-321 aa · 67 aa · 14.0% of protein
Raw token
HisKA:255:0.00000000118:321:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM78_RS00580
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550055
ClassHKTypeClassicLength477 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550055#COM78_RS00580Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length477 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 477 aa (32.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa477 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
366-455 aa · 90 aa · 18.9% of protein
Raw token
HATPase_c:366:5.37e-21:455:90:109- Raw architecture: HisKA:255:0.00000000118:321:67:64#HATPase_c:366:5.37e-21:455:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550055::NZ_NVKI01000002.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75014-77090Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM78_00580RefSeq proteinWP_098907514.1
Context group ID
GCF_002550055::NZ_NVKI01000002.1::G00065Context members
COM78_RS00575COM78_RS00580
Partner locus tags
COM78_RS00575COM78_RS00580
Partner old locus tags
COM78_00575COM78_00580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098907514.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM78_RS00580Primary locus identifier stored in the genes table.
Old locus tagCOM78_00580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKI01000002.1Sequence record reported by the local genomic context database.
Genomic interval75 657-77 090 nt1 434 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 014-77 090 ntGCF_002550055::NZ_NVKI01000002.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550055::NZ_NVKI01000002.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span75 014-77 090 nt2 077 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 014 nt77 090 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM78_RS00575GCF_002550055#COM78_RS00575
RROmpR
75 014-75 679 nt · Forward (+)
COM78_RS00580GCF_002550055#COM78_RS00580
HKClassicCurrent focus
75 657-77 090 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550055#COM78_RS00580The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1647204
Simplified PFAM architecture for HKOC_1647204
PFAM domain coverage: 173 / 477 aa (36.3%)
1 aa477 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[256-320] | HATPase_c[367-474]
- Domain count: 2
- Matched identifier: HKOC_1647204
- Positioned domains: HisKA 256-320 ; HATPase_c 367-474
Cluster members and taxonomy
Representative gene: GCF_002550055#COM78_RS00580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550055
AssemblyASM255005v1 · Scaffoldhaploid
Genome composition6 164 715 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key