1 HisKA#1
138-204 aa · 67 aa · 10.3% of protein
Raw token
HisKA:138:2.47e-18:204:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS07155
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_002549945
ClassHKTypeHybridLength648 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549945#CGS56_RS07155Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length648 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 648 aa (64.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa648 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
251-365 aa · 115 aa · 17.7% of protein
Raw token
HATPase_c:251:9.13e-32:365:115:1093 Response_reg#3
388-503 aa · 116 aa · 17.9% of protein
Raw token
Response_reg:388:0.00000000000000359:503:116:1114 Response_reg#4
528-644 aa · 117 aa · 18.1% of protein
Raw token
Response_reg:528:1.84e-33:644:117:111- Raw architecture: HisKA:138:2.47e-18:204:67:64#HATPase_c:251:9.13e-32:365:115:109#Response_reg:388:0.00000000000000359:503:116:111#Response_reg:528:1.84e-33:644:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549945::NZ_NMTW01000030.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span49408-51987Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_07145RefSeq proteinWP_420920277.1
Context group ID
GCF_002549945::NZ_NMTW01000030.1::G00012Context members
CGS56_RS07155
Partner locus tags
CGS56_RS07155
Partner old locus tags
CGS56_07145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_420920277.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS07155Primary locus identifier stored in the genes table.
Old locus tagCGS56_07145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000030.1Sequence record reported by the local genomic context database.
Genomic interval49 408-51 987 nt2 580 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 408-51 987 ntGCF_002549945::NZ_NMTW01000030.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000030.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000030.1All displayed genes belong to this local TCS context.
Neighborhood span49 408-51 987 nt2 580 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 408 nt51 987 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS56_RS07155GCF_002549945#CGS56_RS07155
HKHybridCurrent focus
49 408-51 987 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS07155The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0901303
Simplified PFAM architecture for HKOC_0901303
PFAM domain coverage: 412 / 648 aa (63.6%)
1 aa648 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[138-204] | HATPase_c[252-365] | Response_reg[388-502] | Response_reg[528-643]
- Domain count: 4
- Matched identifier: HKOC_0901303
- Positioned domains: HisKA 138-204 ; HATPase_c 252-365 ; Response_reg 388-502 ; Response_reg 528-643
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS07155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key