1 Response_reg#1
4-121 aa · 118 aa · 50.0% of protein
Raw token
Response_reg:4:1.79e-22:121:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS05525
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_002549945
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549945#CGS56_RS05525Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 236 aa (88.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-227 aa · 91 aa · 38.6% of protein
Raw token
LytTR:137:8.35e-20:227:97:98- Raw architecture: Response_reg:4:1.79e-22:121:121:111#LytTR:137:8.35e-20:227:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549945::NZ_NMTW01000026.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span170808-171518Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_05515RefSeq proteinWP_097785204.1
Context group ID
GCF_002549945::NZ_NMTW01000026.1::G00027Context members
CGS56_RS05525
Partner locus tags
CGS56_RS05525
Partner old locus tags
CGS56_05515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097785204.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7AAH5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7AAH5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS05525Primary locus identifier stored in the genes table.
Old locus tagCGS56_05515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000026.1Sequence record reported by the local genomic context database.
Genomic interval170 808-171 518 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span170 808-171 518 ntGCF_002549945::NZ_NMTW01000026.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000026.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000026.1All displayed genes belong to this local TCS context.
Neighborhood span170 808-171 518 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 808 nt171 518 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS56_RS05525GCF_002549945#CGS56_RS05525
RRLytTRCurrent focus
170 808-171 518 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS05525The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0994051
Simplified PFAM architecture for RROC_0994051
PFAM domain coverage: 193 / 236 aa (81.8%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_0994051
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 139-226 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS05525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key