1 PAS_3#1
167-259 aa · 93 aa · 8.7% of protein
Raw token
PAS_3:167:6.1e-22:259:93:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS04355
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_002549945
ClassHKTypeHybridLength1070 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549945#CGS56_RS04355Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1070 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage509 / 1070 aa (47.6%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1070 aa
Domain-by-domain annotation5 items
2 HisKA#2
560-626 aa · 67 aa · 6.3% of protein
Raw token
HisKA:560:2.01e-16:626:67:643 HATPase_c#3
673-787 aa · 115 aa · 10.7% of protein
Raw token
HATPase_c:673:5.28e-33:787:115:1094 Response_reg#4
807-923 aa · 117 aa · 10.9% of protein
Raw token
Response_reg:807:1.2e-16:923:117:1115 Response_reg#5
951-1067 aa · 117 aa · 10.9% of protein
Raw token
Response_reg:951:1.09e-28:1067:117:111- Raw architecture: PAS_3:167:6.1e-22:259:93:89#HisKA:560:2.01e-16:626:67:64#HATPase_c:673:5.28e-33:787:115:109#Response_reg:807:1.2e-16:923:117:111#Response_reg:951:1.09e-28:1067:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549945::NZ_NMTW01000020.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span29478-32690Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_04350RefSeq proteinWP_097785075.1
Context group ID
GCF_002549945::NZ_NMTW01000020.1::G00015Context members
CGS56_RS04355
Partner locus tags
CGS56_RS04355
Partner old locus tags
CGS56_04350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097785075.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7AB58Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7AB58_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS04355Primary locus identifier stored in the genes table.
Old locus tagCGS56_04350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000020.1Sequence record reported by the local genomic context database.
Genomic interval29 478-32 690 nt3 213 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 478-32 690 ntGCF_002549945::NZ_NMTW01000020.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000020.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000020.1All displayed genes belong to this local TCS context.
Neighborhood span29 478-32 690 nt3 213 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 478 nt32 690 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS56_RS04355GCF_002549945#CGS56_RS04355
HKHybridCurrent focus
29 478-32 690 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS04355The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0246479
Simplified PFAM architecture for HKOC_0246479
PFAM domain coverage: 507 / 1070 aa (47.4%)
1 aa1070 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[168-259] | HisKA[560-626] | HATPase_c[673-788] | Response_reg[807-922] | Response_reg[951-1066]
- Domain count: 5
- Matched identifier: HKOC_0246479
- Positioned domains: PAS_3 168-259 ; HisKA 560-626 ; HATPase_c 673-788 ; Response_reg 807-922 ; Response_reg 951-1066
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS04355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key