1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.00000012:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS56_RS01790
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002549945
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002549945#CGS56_RS01790Stable P2CS identifier used across views.
GenomeGCF_002549945Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 343 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:1.88e-27:341:101:109- Raw architecture: HisKA:123:0.00000012:189:67:64#HATPase_c:241:1.88e-27:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002549945::NZ_NMTW01000008.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87155-88875Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS56_01790RefSeq proteinWP_097784846.1
Context group ID
GCF_002549945::NZ_NMTW01000008.1::G00010Context members
CGS56_RS01790CGS56_RS01795
Partner locus tags
CGS56_RS01790CGS56_RS01795
Partner old locus tags
CGS56_01790CGS56_01795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097784846.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1IPH0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1IPH0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS56_RS01790Primary locus identifier stored in the genes table.
Old locus tagCGS56_01790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTW01000008.1Sequence record reported by the local genomic context database.
Genomic interval87 155-88 186 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 155-88 875 ntGCF_002549945::NZ_NMTW01000008.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549945::NZ_NMTW01000008.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTW01000008.1All displayed genes belong to this local TCS context.
Neighborhood span87 155-88 875 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 155 nt88 875 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS56_RS01790GCF_002549945#CGS56_RS01790
HKClassicCurrent focus
87 155-88 186 nt · Reverse (-)
CGS56_RS01795GCF_002549945#CGS56_RS01795
RROmpR
88 183-88 875 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS01790The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828620
Simplified PFAM architecture for HKOC_2828620
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2828620
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS01790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549945
AssemblyASM254994v1 · Scaffoldhaploid
Genome composition3 275 218 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key