1 Response_reg#1
5-109 aa · 105 aa · 62.5% of protein
Raw token
Response_reg:5:2.79e-29:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU68_RS17485
Response regulator, CheY family
Clostridioides difficile · GCF_002303575
ClassRRTypeCheYLength168 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303575#BGU68_RS17485Stable P2CS identifier used across views.
GenomeGCF_002303575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length168 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage105 / 168 aa (62.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa168 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:2.79e-29:109:106:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303575::NZ_MOTJ01000112.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1299-1805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU68_17255RefSeq proteinWP_330402423.1
Context group ID
GCF_002303575::NZ_MOTJ01000112.1::G00055Context members
BGU68_RS17485
Partner locus tags
BGU68_RS17485
Partner old locus tags
BGU68_17255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330402423.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU68_RS17485Primary locus identifier stored in the genes table.
Old locus tagBGU68_17255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTJ01000112.1Sequence record reported by the local genomic context database.
Genomic interval1 299-1 805 nt507 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 299-1 805 ntGCF_002303575::NZ_MOTJ01000112.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303575::NZ_MOTJ01000112.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTJ01000112.1All displayed genes belong to this local TCS context.
Neighborhood span1 299-1 805 nt507 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 299 nt1 805 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU68_RS17485GCF_002303575#BGU68_RS17485
RRCheYCurrent focus
1 299-1 805 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022359795#MJO50_RS17260Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0632387
Simplified PFAM architecture for RROC_0632387
PFAM domain coverage: 184 / 265 aa (69.4%)
1 aa265 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[29-135] | Trans_reg_C[184-260]
- Domain count: 2
- Matched identifier: RROC_0632387
- Positioned domains: Response_reg 29-135 ; Trans_reg_C 184-260
Cluster members and taxonomy
Representative gene: GCF_022359795#MJO50_RS17260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303575
AssemblyASM230357v1 · Contighaploid
Genome composition4 339 103 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 110 · HK 53 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key