1 PAS#1
527-638 aa · 112 aa · 12.2% of protein
Raw token
PAS:527:0.0000395:638:114:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU64_RS08390
Histidine kinase, Classic
Clostridioides difficile · GCF_002303485
ClassHKTypeClassicLength918 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303485#BGU64_RS08390Stable P2CS identifier used across views.
GenomeGCF_002303485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length918 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage295 / 918 aa (32.1%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa918 aa
Domain-by-domain annotation3 items
2 HisKA#2
661-732 aa · 72 aa · 7.8% of protein
Raw token
HisKA:661:0.00000000000000709:732:72:643 HATPase_c#3
779-889 aa · 111 aa · 12.1% of protein
Raw token
HATPase_c:779:3.67e-31:889:111:109- Raw architecture: PAS:527:0.0000395:638:114:113#HisKA:661:0.00000000000000709:732:72:64#HATPase_c:779:3.67e-31:889:111:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303485::NZ_MOTF01000020.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span41955-44711Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU64_08295RefSeq proteinWP_096000713.1
Context group ID
GCF_002303485::NZ_MOTF01000020.1::G00023Context members
BGU64_RS08390
Partner locus tags
BGU64_RS08390
Partner old locus tags
BGU64_08295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_096000713.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU64_RS08390Primary locus identifier stored in the genes table.
Old locus tagBGU64_08295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTF01000020.1Sequence record reported by the local genomic context database.
Genomic interval41 955-44 711 nt2 757 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 955-44 711 ntGCF_002303485::NZ_MOTF01000020.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303485::NZ_MOTF01000020.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTF01000020.1All displayed genes belong to this local TCS context.
Neighborhood span41 955-44 711 nt2 757 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 955 nt44 711 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU64_RS08390GCF_002303485#BGU64_RS08390
HKClassicCurrent focus
41 955-44 711 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303485#BGU64_RS08390The current gene is the representative for this cluster.
PFAM architecturePAS_8 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0373513
Simplified PFAM architecture for HKOC_0373513
PFAM domain coverage: 340 / 918 aa (37.0%)
1 aa918 aa
PAS_8PAS_9HisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_8[303-355] | PAS_9[535-638] | HisKA[661-732] | HATPase_c[779-889]
- Domain count: 4
- Matched identifier: HKOC_0373513
- Positioned domains: PAS_8 303-355 ; PAS_9 535-638 ; HisKA 661-732 ; HATPase_c 779-889
Cluster members and taxonomy
Representative gene: GCF_002303485#BGU64_RS08390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303485
AssemblyASM230348v1 · Contighaploid
Genome composition4 174 257 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key