1 HisKA#1
457-524 aa · 68 aa · 9.9% of protein
Raw token
HisKA:457:0.000000000000027:524:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU60_RS04205
Histidine kinase, Classic
Clostridioides difficile · GCF_002303425
ClassHKTypeClassicLength690 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303425#BGU60_RS04205Stable P2CS identifier used across views.
GenomeGCF_002303425Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length690 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 690 aa (23.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa690 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
570-663 aa · 94 aa · 13.6% of protein
Raw token
HATPase_c:570:0.000000000000728:663:98:109- Raw architecture: HisKA:457:0.000000000000027:524:68:64#HATPase_c:570:0.000000000000728:663:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303425::NZ_MOTC01000006.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41228-44188Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU60_04075RefSeq proteinWP_176482315.1
Context group ID
GCF_002303425::NZ_MOTC01000006.1::G00016Context members
BGU60_RS04195BGU60_RS04205
Partner locus tags
BGU60_RS04195BGU60_RS04205
Partner old locus tags
BGU60_04065BGU60_04075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_176482315.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU60_RS04205Primary locus identifier stored in the genes table.
Old locus tagBGU60_04075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTC01000006.1Sequence record reported by the local genomic context database.
Genomic interval42 116-44 188 nt2 073 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 228-44 188 ntGCF_002303425::NZ_MOTC01000006.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303425::NZ_MOTC01000006.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTC01000006.1All displayed genes belong to this local TCS context.
Neighborhood span41 228-44 188 nt2 961 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 228 nt44 188 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU60_RS04195GCF_002303425#BGU60_RS04195
RROmpR
41 228-41 920 nt · Forward (+)
BGU60_RS04205GCF_002303425#BGU60_RS04205
HKClassicCurrent focus
42 116-44 188 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303425#BGU60_RS04205The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0791533
Simplified PFAM architecture for HKOC_0791533
PFAM domain coverage: 160 / 690 aa (23.2%)
1 aa690 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[457-524] | HATPase_c[571-662]
- Domain count: 2
- Matched identifier: HKOC_0791533
- Positioned domains: HisKA 457-524 ; HATPase_c 571-662
Cluster members and taxonomy
Representative gene: GCF_002303425#BGU60_RS04205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303425
AssemblyASM230342v1 · Contighaploid
Genome composition4 026 332 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 50 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key