1 Response_reg#1
4-112 aa · 109 aa · 55.3% of protein
Raw token
Response_reg:4:2.6e-37:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU61_RS21205
Response regulator OmpR family
Clostridioides difficile · GCF_002303415
ClassRRTypeOmpRLength197 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303415#BGU61_RS21205Stable P2CS identifier used across views.
GenomeGCF_002303415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length197 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 197 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa197 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-195 aa · 42 aa · 21.3% of protein
Raw token
Trans_reg_C:154:0.000000000000222:195:42:77- Raw architecture: Response_reg:4:2.6e-37:112:110:111#Trans_reg_C:154:0.000000000000222:195:42:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303415::NZ_MOTD01000213.1::G00062
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span66-655Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU61_20795RefSeq proteinWP_095926718.1
Context group ID
GCF_002303415::NZ_MOTD01000213.1::G00062Context members
BGU61_RS21205
Partner locus tags
BGU61_RS21205
Partner old locus tags
BGU61_20795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095926718.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU61_RS21205Primary locus identifier stored in the genes table.
Old locus tagBGU61_20795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTD01000213.1Sequence record reported by the local genomic context database.
Genomic interval66-655 nt590 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66-655 ntGCF_002303415::NZ_MOTD01000213.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303415::NZ_MOTD01000213.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTD01000213.1All displayed genes belong to this local TCS context.
Neighborhood span66-655 nt590 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 nt655 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU61_RS21205GCF_002303415#BGU61_RS21205
RROmpRCurrent focus
66-655 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0107600Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200872
Simplified PFAM architecture for RROC_1200872
PFAM domain coverage: 183 / 230 aa (79.6%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1200872
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-226 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0107600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303415
AssemblyASM230341v1 · Contighaploid
Genome composition4 379 705 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key